Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0578.Seq
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   3.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   5.0  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   6.7  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   6.7  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    24   8.8  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   8.8  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   8.8  

>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 282 QKRXKKSATYRSDPCRPPLLLIRNIISP 199
           QK+ +K+A+Y + P  PP +  +NI+ P
Sbjct: 152 QKQKRKTASYTNSPVTPP-INDKNILLP 178


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 346 WVPPQLPKVNWDKEIDE 296
           W+ P + K  W +E DE
Sbjct: 51  WIDPSIKKTEWSREEDE 67


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 FVFGRVXXXSKDHVVFVERLE 436
           F+FG V   SK H+ +V + E
Sbjct: 164 FIFGSVKEVSKHHITYVPKQE 184


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 134 SRTPGHQQNVQRSADLLGLDTAKPDPVP 51
           S T  H++  +   DLLG+   KP P P
Sbjct: 224 SNTSKHRRPNKSLKDLLGIQKEKPPPPP 251


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 74  CPSRGDLRXVGRFAGVRVCGRRAPTELR 157
           C +R D++ V R A   +  +R PTELR
Sbjct: 314 CGARYDIQGVLREACSNLLKKRVPTELR 341


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 372 CSYLDAYXXXPRTMSFSWNVW 434
           C+Y+  Y     + S +WN W
Sbjct: 84  CTYVGRYVDEALSFSLTWNYW 104


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 307 EIDEVDGSTEKXKEVGD---VSLGPLPAPAVADKK 212
           E D  +  TE   E+ D   VSL  LP+  V  KK
Sbjct: 157 EADSQESDTESLPEINDSSDVSLSDLPSTNVTPKK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,795
Number of Sequences: 5004
Number of extensions: 26233
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)