Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0578.Seq
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869 29 1.6
01_06_0924 - 33058194-33058697,33058798-33060147,33060234-330603... 29 2.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 2.9
04_04_1366 + 32970640-32970981,32971678-32971765,32971919-329720... 28 2.9
09_06_0072 - 20682424-20682870,20683928-20684854 28 3.8
09_02_0549 + 10485415-10486107 28 3.8
05_07_0361 + 29555446-29556138 27 5.0
05_04_0178 + 18775074-18775928 27 5.0
04_04_1125 + 31085106-31085714 27 6.6
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 27 6.6
02_01_0117 - 866336-866890,867484-869010 27 6.6
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 27 8.7
08_02_0960 + 23058393-23059739 27 8.7
04_03_0007 + 9287927-9288619 27 8.7
04_01_0446 - 5815231-5816202 27 8.7
03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523 27 8.7
02_05_1245 + 35223504-35224778 27 8.7
01_06_1162 + 35010414-35011106 27 8.7
>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
Length = 400
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 GTSSCRIRHEVVA-GHGVRFGGVQAEEICGXLDVLLVSGCA 131
GTS+ R+ H GHG+ G + E G ++ + VSG A
Sbjct: 229 GTSNLRVEHVSCGPGHGISIGSLGKESEEGGVENVTVSGAA 269
>01_06_0924 -
33058194-33058697,33058798-33060147,33060234-33060303,
33060918-33060976
Length = 660
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 114 LVSGCAGGXLLPSLGLTEDFGFGMLGITSDLLYFLSATAGAGRG 245
L C L+P+LG T + + + + L YF+S+T G G G
Sbjct: 371 LEDACLDDLLVPNLGYTVETLYDIDCVQRILDYFMSSTDGLGTG 414
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 142 SXPPAHPDTSKTSNXPQISSAWTPPNRTPCPAT 44
S PP+ + P +S TPP R+P PA+
Sbjct: 191 STPPSAKTLTPPRRSPSPASTLTPPRRSPSPAS 223
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -1
Query: 145 RSXPP---AHPDTSKTSNXPQISSAWTPPNRTPCPATT 41
RS PP P S + P + TPP R+P PA+T
Sbjct: 174 RSSPPFALQPPTPSWRPSTPPSAKTLTPPRRSPSPAST 211
>04_04_1366 +
32970640-32970981,32971678-32971765,32971919-32972014,
32972583-32972593
Length = 178
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 81 AEEICGXLDV---LLVSGCAGGXLLPSLGLTEDFGFGMLGI 194
AEE+ G +DV L+ +GC GG + +G ED G G G+
Sbjct: 28 AEEL-GAVDVDGDLVAAGCGGGGVGGGVGGAEDGGAGEAGV 67
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDE--VDGSTEKXKEVGDVSLGPLPAPA 227
PP P+ +++ E V+G E E D L P PAPA
Sbjct: 92 PPPPPEEEDEEDAAEAAVEGEVEGEVEARDAKLNPAPAPA 131
>09_02_0549 + 10485415-10486107
Length = 230
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRI 29
P P +SN P+I+ W P +++P T +I
Sbjct: 165 PGRPTVVSSSNAPRIAPIWRPIDKSPLGNPTGKKI 199
>05_07_0361 + 29555446-29556138
Length = 230
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRI 29
P P +SN P+I+ W P +++P T +I
Sbjct: 165 PGRPTVVSSSNAPRIAPIWRPIDKSPFGNPTGKKI 199
>05_04_0178 + 18775074-18775928
Length = 284
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 45 VAGHGVRFGGVQAEEICGXLDVLLVSGCAG 134
+A + VR GVQAE G L +LLV CAG
Sbjct: 169 LAVYAVRTAGVQAERCGGRLRLLLVP-CAG 197
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCPAT 44
PP T T P + WTPP TP P T
Sbjct: 46 PPPPTPTPATPTTPP--TPWTPPPATPTPPT 74
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 142 SXPPAHPDTSKTSNXPQISSAWTPPNRTPCPATTS 38
S PP TS P + S+ PP TP P++++
Sbjct: 35 STPPPPSPIPSTSPRPTLRSSSLPPASTPSPSSSA 69
>02_01_0117 - 866336-866890,867484-869010
Length = 693
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 96 GXLDVLLVSGCAGGXLLPSLGLTEDFGFGMLGITSDLLYFLSATAGAGRG 245
G + L G G + + L +DF G L +TS F+S G G G
Sbjct: 467 GVVAGLAACGLMMGIVSTASDLVQDFKTGYLTLTSPRSMFVSQVLGTGMG 516
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Frame = -1
Query: 136 PPAHPDTSKTSNXPQI--------SSAWTPPNRTPCPATTSCRIR 26
PP+ P T+K Q+ SSA +PP+RTP P +R
Sbjct: 16 PPSSPSTAKAFQQQQLHTHGQHRGSSAPSPPHRTPEPVAPVWHLR 60
>08_02_0960 + 23058393-23059739
Length = 448
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 276 RXKKSATYRSDPCRPPL 226
R +SATYR PCR PL
Sbjct: 135 RPARSATYRLVPCRSPL 151
>04_03_0007 + 9287927-9288619
Length = 230
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRI 29
P P +SN P I+ W P +++P T +I
Sbjct: 165 PGRPTVVSSSNAPGIAPIWRPIDKSPLGNPTGKKI 199
>04_01_0446 - 5815231-5816202
Length = 323
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 97 PQISSAWTPPNRTPCPATTSCR 32
P I + P NRTP P+ +CR
Sbjct: 26 PTIFFPFLPTNRTPAPSARACR 47
>03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523
Length = 149
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 288 DRQKRXKKSATYRSDPCRPPLLL 220
D K S T + DPC PPLLL
Sbjct: 121 DDSKDRVGSTTVKCDPCIPPLLL 143
>02_05_1245 + 35223504-35224778
Length = 424
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +2
Query: 14 HELVPNSARGRCWARG---PVWRCPSRGDLRXV-GRFAGVRVCGRRAPTEL 154
H L PNS RC RG V+R P R D V R A + C A L
Sbjct: 121 HRLAPNSTSFRCSLRGHSAAVFRRPLRRDQAHVAARLAALGHCHHAAIARL 171
>01_06_1162 + 35010414-35011106
Length = 230
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRI 29
P P +SN P I+ W P +++P T +I
Sbjct: 165 PGRPTVVSSSNAPGIAPIWRPIDKSPLGNPTGKKI 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,543
Number of Sequences: 37544
Number of extensions: 226911
Number of successful extensions: 764
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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