Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0578.Seq
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)                  29   1.7  
SB_55232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)                     27   6.7  
SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  HEVVAGHGVRFGGVQAEEICGXLDVLLVSGCAGGXL 143
           HE+  GH     G+  +E CG  D  ++ GC GG +
Sbjct: 37  HEIFKGHSFLLFGI-LDEFCGKRDGTVIIGCLGGRM 71


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTS 38
           PA PDT      P  +SA  PP  T  PATTS
Sbjct: 96  PAQPDTD-VPPPPATTSAPPPPTTTAPPATTS 126


>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
          Length = 561

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 151 LGRSXPPAHPDTSKTSNX--PQISSAWTPPNRTPCPATTSCRIR 26
           L  + PP + DT+++S     + SSA TPP+    P TT    R
Sbjct: 269 LSITAPPRNEDTTRSSKSIFSKCSSATTPPSNNARPKTTKSTTR 312


>SB_55232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 116 GVRVCGRRAPTELRTD*RFWFRYARYHVGLI 208
           G+++  R  PT+ +T  R W R   +H+ LI
Sbjct: 5   GIQIYARVKPTKAKTGVRRWMRLKMFHIKLI 35


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 151 LGRSXPPAHPDTSKT--SNXPQISSAWTPPNRTPCPATTSCRIR 26
           L  + PP + DT+++  S   + SSA TPP+    P TT    R
Sbjct: 671 LSITAPPRNEDTTRSGKSIFSKCSSATTPPSNNARPKTTKSTTR 714


>SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)
          Length = 111

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 136 PPAHPDTSKT--SNXPQISSAWTPPNRT 59
           PP+ P +  T  SN   I+ +W PPN T
Sbjct: 2   PPSAPSSLNTTFSNDSAITLSWLPPNNT 29


>SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 122 GHQQNVQRSADLLGLDTAKPDPVPSNDLVPNS 27
           G+   ++R+  L+G DT KP P  S+  +PNS
Sbjct: 68  GYSNLIRRAKYLMG-DTLKPSPPVSSAALPNS 98


>SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 136 PPAHPDTSKT--SNXPQISSAWTPPNRT 59
           PP+ P +  T  SN   I+ +W PPN T
Sbjct: 298 PPSAPSSLNTTFSNDSAITLSWLPPNNT 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,682
Number of Sequences: 59808
Number of extensions: 221717
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)