Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0578.Seq
(436 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form ... 31 1.7
AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form ... 31 1.7
AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form ... 31 1.7
AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein. 31 1.7
AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein. 31 1.7
AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein. 31 1.7
AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein. 31 1.7
AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein. 31 1.7
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 30 3.0
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 30 3.0
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 30 3.0
EF071959-1|ABK59097.1| 403|Homo sapiens PHD finger protein 23a ... 29 9.1
EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion prot... 29 9.1
BC142692-1|AAI42693.1| 805|Homo sapiens FLJ10357 protein protein. 29 9.1
BC008630-1|AAH08630.1| 315|Homo sapiens PHF23 protein protein. 29 9.1
BC002509-1|AAH02509.1| 403|Homo sapiens PHD finger protein 23 p... 29 9.1
BC000084-1|AAH00084.3| 326|Homo sapiens FLJ10357 protein protein. 29 9.1
AK074766-1|BAC11192.1| 403|Homo sapiens protein ( Homo sapiens ... 29 9.1
AK074057-1|BAB84883.1| 1546|Homo sapiens FLJ00128 protein protein. 29 9.1
AK024463-1|BAB15753.1| 1310|Homo sapiens FLJ00056 protein protein. 29 9.1
AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing p... 29 9.1
>AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 3 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 2 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 1 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 321 RGRCWAAGPVPELCPPRG 338
>AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein.
Length = 2816
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 38 RGRCWARGPVWR-CPSRG 88
RGRCWA GPV CP RG
Sbjct: 328 RGRCWAAGPVPELCPPRG 345
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 124 PDTSKTSNXPQISSAWTPPNRTPCPATTS 38
P T+ T + P I++ PP TP P TT+
Sbjct: 955 PPTTTTPSPPTITTTTPPPTTTPSPPTTT 983
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 124 PDTSKTSNXPQISSAWTPPNRTPCPATTS 38
P T+ T + P I++ PP TP P TT+
Sbjct: 238 PPTTTTPSPPTITTTTPPPTTTPSPPTTT 266
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 30.3 bits (65), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 124 PDTSKTSNXPQISSAWTPPNRTPCPATTS 38
P T+ T + P I++ PP TP P TT+
Sbjct: 1580 PPTTTTPSPPTITTTTPPPTTTPSPPTTT 1608
>EF071959-1|ABK59097.1| 403|Homo sapiens PHD finger protein 23a
protein.
Length = 403
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
PPQ P + D E +E + E+ +E+ V G P P +
Sbjct: 237 PPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVL 275
>EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion protein
protein.
Length = 797
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
PPQ P + D E +E + E+ +E+ V G P P +
Sbjct: 631 PPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVL 669
>BC142692-1|AAI42693.1| 805|Homo sapiens FLJ10357 protein protein.
Length = 805
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 343 VPPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
+P ++ + WD ++ ++ + E GDVS GP +P++
Sbjct: 730 LPARVEEEAWDLDVKQISLAPETLDSSGDVSPGPRNSPSL 769
>BC008630-1|AAH08630.1| 315|Homo sapiens PHF23 protein protein.
Length = 315
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
PPQ P + D E +E + E+ +E+ V G P P +
Sbjct: 149 PPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVL 187
>BC002509-1|AAH02509.1| 403|Homo sapiens PHD finger protein 23
protein.
Length = 403
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
PPQ P + D E +E + E+ +E+ V G P P +
Sbjct: 237 PPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVL 275
>BC000084-1|AAH00084.3| 326|Homo sapiens FLJ10357 protein protein.
Length = 326
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 343 VPPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
+P ++ + WD ++ ++ + E GDVS GP +P++
Sbjct: 251 LPARVEEEAWDLDVKQISLAPETLDSSGDVSPGPRNSPSL 290
>AK074766-1|BAC11192.1| 403|Homo sapiens protein ( Homo sapiens
cDNA FLJ90285 fis, clone NT2RP1000679. ).
Length = 403
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 340 PPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
PPQ P + D E +E + E+ +E+ V G P P +
Sbjct: 237 PPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVL 275
>AK074057-1|BAB84883.1| 1546|Homo sapiens FLJ00128 protein protein.
Length = 1546
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 343 VPPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
+P ++ + WD ++ ++ + E GDVS GP +P++
Sbjct: 1471 LPARVEEEAWDLDVKQISLAPETLDSSGDVSPGPRNSPSL 1510
>AK024463-1|BAB15753.1| 1310|Homo sapiens FLJ00056 protein protein.
Length = 1310
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 343 VPPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLPAPAV 224
+P ++ + WD ++ ++ + E GDVS GP +P++
Sbjct: 1235 LPARVEEEAWDLDVKQISLAPETLDSSGDVSPGPRNSPSL 1274
>AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing
protein AIPC protein.
Length = 2641
Score = 28.7 bits (61), Expect = 9.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = -1
Query: 130 AHPDTSKTS------NXPQISSAWTPPNRTPCPATTSCRIRHELVP 11
AHPD SKTS + P+ S P T C A + R+ HE P
Sbjct: 1047 AHPDPSKTSVDTGQVSRPENPSQPASPRVTKCKARSPVRLPHEGSP 1092
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,117,812
Number of Sequences: 237096
Number of extensions: 1115365
Number of successful extensions: 6966
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 6758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6960
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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