Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0578.Seq
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   4.4  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   4.4  
AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    27   5.9  

>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 127 HPDTSKTSNXPQISSAWTPPNRTPC 53
           H  TS T++     SAW   NR PC
Sbjct: 525 HATTSGTTSAKGAGSAWQETNRAPC 549


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 170 FWFRYARYHVGLIIFLISNSGGRQGSERYVADFFXLFCRSIYFVYFF 310
           F++  A Y V L +  I+ +      ++ V     +FC   +F+ FF
Sbjct: 247 FYYTIAVYDVALFVIAIATARALVNFDKAVLHIHYIFCIFSFFINFF 293


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 127 HPDTSKTSNXPQISSAWTPPNRTPC 53
           H  TS T++     SAW   NR PC
Sbjct: 525 HATTSGTTSAKGAGSAWQETNRAPC 549


>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +2

Query: 182 YARYHVGLIIFLISNSGGRQ-GSER--YVADFFXLFCR-SIYFVYF 307
           + RY VG ++ ++ + GG   G +R  ++   F + C   I+F+YF
Sbjct: 358 FLRYVVGAVVAVLDHFGGEHVGRKRMHFITVSFIMCCMFGIFFIYF 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,760
Number of Sequences: 27780
Number of extensions: 163359
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)