Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0578.Seq
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   0.85 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.85 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   1.5  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   6.0  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 145 RSXPPAHPDTSKTSNXPQ 92
           R  PP HP T+  ++ PQ
Sbjct: 99  RKLPPLHPHTAMVTHLPQ 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 130 AHPDT---SKTSNXPQISSAWTPPNRTPCPATTSC 35
           AH DT   ++    P +  A   PN T CP T +C
Sbjct: 185 AHLDTCDFTRDKVAPILVRARETPNYTACPPTLAC 219


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = -1

Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVPE 8
           PP  P   +    P+       P   P P     R+R E  PE
Sbjct: 24  PPTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPE 66


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = -1

Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVPE 8
           PP  P   +    P+       P   P P     R+R E  PE
Sbjct: 25  PPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPE 67


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/54 (22%), Positives = 20/54 (37%)
 Frame = -1

Query: 421  ENDMVLGXXXYASKYEQXXNTXXRXWVPPQLPKVNWDKEIDEVDGSTEKXKEVG 260
            + D V+    + SK     +T    W P  +     DK+ +      E  +E G
Sbjct: 1129 QKDPVIFSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAG 1182


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = -1

Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVPE 8
           PP  P   +    P+       P   P P     R+R E  P+
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPK 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,637
Number of Sequences: 438
Number of extensions: 2083
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)