Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0578.Seq
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 32 0.15
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr... 31 0.25
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 29 1.4
At4g02450.1 68417.m00332 glycine-rich protein similar to several... 28 3.1
At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogen... 28 3.1
At1g23540.1 68414.m02960 protein kinase family protein contains ... 28 3.1
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 27 4.1
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 27 4.1
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 27 7.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 7.2
At3g07670.1 68416.m00919 SET domain-containing protein similar t... 27 7.2
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative... 26 9.5
At5g17190.1 68418.m02014 expressed protein similar to unknown pr... 26 9.5
At3g03160.1 68416.m00312 expressed protein 26 9.5
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 343 VPPQLPKVNWDKEIDEVDGSTEKXKEVGDVSLGPLP 236
+ P LP D++ DE+DGS + K V +S+G P
Sbjct: 827 IRPSLPTETSDRKPDELDGSDKDPKNVSGLSIGSSP 862
>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 494
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 121 DTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVPEFL 2
+++ + P SS++ P TP P T SCR++ EL P L
Sbjct: 364 ESTPPGSLPPTSSSFHP--LTPTPQTLSCRVKEELCPSSL 401
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVP 11
P P++S N P+ SS PP P P +S E+VP
Sbjct: 167 PNPPESSSNPNPPESSSNPNPPITIPYPPESSSPNPPEIVP 207
>At4g02450.1 68417.m00332 glycine-rich protein similar to several
proteins containing a tandem repeat region such as
Plasmodium falciparum GGM tandem repeat protein
(GB:U27807)
Length = 241
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 364 NTXXRXWVPPQLPKVNWDKEIDEVD 290
N R PP KV+WDK +DE D
Sbjct: 88 NKLLRVKKPPHYVKVDWDKWVDEDD 112
>At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
zeta-crystallin / quinone reductase (NADPH) - Mus
musculus, PIR:A54932; contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 348
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +3
Query: 48 AGHGVRFGGVQAEEICGXLDVLLVSGCAGGXLLPSLGLTEDFGFGMLGITSDLLYFL 218
A GV VQ ++CG + + + G LL S+G+ G + S + F+
Sbjct: 159 AAGGVGLAAVQIGKVCGAIVIAVARGTEKIQLLKSMGVDHVVDLGTENVISSVKEFI 215
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCP 50
PPA P+ S +N P +PP +P P
Sbjct: 112 PPAPPNESNDNNPPPSQDLQSPPPSSPSP 140
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTP-PNRTP 56
P+HP +++T + PQ W P P P
Sbjct: 221 PSHPSSAQTQSFPQYQQNWPPQPQARP 247
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTP-PNRTP 56
P+HP +++T + PQ W P P P
Sbjct: 279 PSHPSSAQTQSFPQYQQNWPPQPQARP 305
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 136 PPAHPDTSKTSNXPQISSAWTPPNRTPCPATT 41
P P + T P+ A TPPN P PA T
Sbjct: 73 PKPKPAPAPTPPKPKPKPAPTPPNPKPTPAPT 104
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 133 PAHPDTSKTSNXPQISSAWTPPNRTPCPATTSCRIRHELVP 11
P+ PD + T P + S PP+ TP P T S ++ P
Sbjct: 193 PSPPDVTPTPPTPSVPS---PPDVTPTPPTPSVPSPPDVTP 230
>At3g07670.1 68416.m00919 SET domain-containing protein similar to
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I [Spinacia oleracea]
GI:3403236; contains Pfam profile PF00856: SET domain
Length = 504
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 334 QLPKVNWDKEIDEVDGSTEKXKEVGDVSLGP 242
+ PK++W EID ++ +T + D L P
Sbjct: 58 EAPKISWGCEIDSLENATSLQNWLSDSGLPP 88
>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
similar to zeta-crystallin homolog TED2 from Zinnia
elegans [gi:531096]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 406
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 83 GLDTAKPDPVPSNDLVPNS 27
G + PDP+P +DL P S
Sbjct: 321 GQSSGSPDPIPLSDLAPKS 339
>At5g17190.1 68418.m02014 expressed protein similar to unknown
protein (gb|AAF26109.1)
Length = 130
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 241 GVRAIRRRLLXPFLSIHLLRLFLYPS*LW 327
G+ A+ R LL PFLSI LFL W
Sbjct: 33 GLVAVTRNLLKPFLSIIPFCLFLLMDIYW 61
>At3g03160.1 68416.m00312 expressed protein
Length = 130
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 241 GVRAIRRRLLXPFLSIHLLRLFLYPS*LW 327
G+ A+ R LL PFLSI LFL W
Sbjct: 33 GLVAVTRNLLKPFLSIVPFCLFLLMDIYW 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,736
Number of Sequences: 28952
Number of extensions: 157843
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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