Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0574.Seq
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    68   2e-12
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   5.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   7.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   9.4  
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe...    26   9.4  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    26   9.4  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 33/61 (54%), Positives = 36/61 (59%)
 Frame = -2

Query: 256 SEVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFAL 77
           +E+Y WDSYF  LGL      D    MV NF  EI  YG I N NR+YYL RSQPPF   
Sbjct: 285 NELYGWDSYFESLGLLVDDRVDLAKGMVENFIFEITYYGKILNANRTYYLLRSQPPFLTD 344

Query: 76  M 74
           M
Sbjct: 345 M 345


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 478 IGCSKTRADLICAISLTSISPCRKKARNMFRQRGSHCANILTDFGRY*RVLPKT 317
           + C K  AD  C  S TS   CRKK+  +     +   N+L  +     + P T
Sbjct: 37  LACQKAHAD--CHFSTTSWRACRKKSAPLHCPSTNGKTNVLPSYASTPSLSPMT 88


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 545  FSGPKNLCRCRADSDPLMILADYRMQQNQ-SGFDL 444
            F+     CRC A +DP  +L  +R+ +N+ SG  L
Sbjct: 1302 FASESEFCRCGASADPYTVLF-WRLYRNKPSGIKL 1335


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 344 PVLTRSTENTEKWDSLLPLPEPYVVPGG 261
           P LT         DS  PLPE  V PGG
Sbjct: 138 PFLTSPGNKQNTVDSFRPLPETPVSPGG 165


>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 588 FY*GRCLMMCKTPNFFRTKKPLPM 517
           FY    L+    P F++++KP+PM
Sbjct: 60  FYGSLVLLASSGPRFYKSRKPVPM 83


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 449 QIRSGFAASDNQQGSSADRCRHGIGKGFLVRKKFGVLHIIKQR 577
           Q  S  AAS NQQ     + R  +    LV  K G+  +I+Q+
Sbjct: 68  QFGSPVAASPNQQPLVESQNRRNVTYASLVIGKLGIAQLIRQQ 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,900,969
Number of Sequences: 5004
Number of extensions: 81043
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)