Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0574.Seq
         (989 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330...    71   1e-12
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    33   0.27 
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510...    33   0.35 
10_08_0072 - 14655379-14656608                                         30   3.3  
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226...    29   5.7  
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178...    29   5.7  
11_02_0008 - 7310001-7310339                                           29   7.6  

>10_08_0657 -
           19632363-19632494,19632587-19632864,19632964-19633084,
           19634337-19634438,19634510-19634622,19635000-19635373,
           19635663-19635688,19636048-19636261,19636343-19636460,
           19636930-19637017,19637113-19637280,19637559-19637631,
           19637796-19637902,19638057-19638094,19638190-19638305,
           19638579-19638698,19639498-19640000
          Length = 896

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = -2

Query: 253 EVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALM 74
           EVYYWDSY+ + GL  S  ++   D+V N  + ++ YG + NG RSYY +RSQPP  + M
Sbjct: 157 EVYYWDSYWVVRGLLVSKMYETAKDIVLNLVYLVEKYGFVLNGARSYYTNRSQPPLLSSM 216

Query: 73  VELLAQHEGDAALKQYLPP 17
           V  +    GD A  + + P
Sbjct: 217 VLDIYMATGDMAFVRRVFP 235


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 304 SHFSVFSVERVNTGQSPSICSRSDCPSGGTYFSPSFGRVKLTLTKWRRSNPLWFC 468
           S+ ++ S E+VN G SPS    S  P     FS + G    + T    S+P+ FC
Sbjct: 828 SNSNLLSSEKVNPGSSPSFAFGSSAPGSSPVFSLAVGSGTTSATPASASSPI-FC 881


>01_02_0050 +
           10649275-10649655,10649807-10649921,10651003-10651009,
           10651035-10651216,10651318-10651530,10651621-10651688,
           10651772-10651846,10651961-10652068,10652413-10652530,
           10652652-10652793,10653084-10653140,10653281-10653701,
           10654064-10654528
          Length = 783

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 181 PRLYPSDRFRQVLTW*SNCPSNI 249
           P  +PSD   Q+L+W SNCPS+I
Sbjct: 337 PNDFPSDLRAQILSWLSNCPSDI 359


>10_08_0072 - 14655379-14656608
          Length = 409

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 23/88 (26%), Positives = 34/88 (38%)
 Frame = -2

Query: 271 CRADLSEVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQP 92
           C   L E     S  T+L LAE  H D + +   +F    +       G+   +LSRS P
Sbjct: 320 CEEKLCERIDVSSVATVLALAEQHHCDGLRNACFDFLSSPENLKAAMAGDGFEHLSRSCP 379

Query: 91  PFFALMVELLAQHEGDAALKQYLPPGGS 8
                +V +L          + +P  GS
Sbjct: 380 SLMTELVAMLGNCHDPQPTHRSMPNTGS 407


>11_06_0146 +
           20621730-20621865,20621947-20622026,20622600-20622686,
           20622789-20622866,20622947-20623038,20623132-20623333,
           20623644-20623734,20624163-20624221,20624413-20624561,
           20624662-20624743,20624828-20625214
          Length = 480

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 298 RESHFSVFSVERVNTGQSPSICSRSDCPSGGTYFSPSFGRVKLT--LTKWRRSN 453
           R +H + F ++R  TGQS  +   S+C   GT   P +G V  T  +++ R+S+
Sbjct: 378 RTAHAAAFRLKRHETGQSDQMGPFSNCKVWGT-VDPDYGPVSGTPDMSETRKSS 430


>03_01_0225 +
           1784211-1784324,1784398-1784668,1784992-1785248,
           1785338-1785450,1791599-1791746,1791943-1792080,
           1792448-1792525
          Length = 372

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 679 WR*FQPCXFLCXPALSVQAEETPVTPQPPDI 587
           WR  +P  F C    S   +E P TP PP +
Sbjct: 35  WRIKRPARFRCCAEPSSPEQENPSTPAPPPV 65


>11_02_0008 - 7310001-7310339
          Length = 112

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +1

Query: 7   WIPRAAGIASTRHRLHAAPVTLPSGQRRAVASGLNSNCG 123
           W  R  GI S   R H APV      RRA+A GL    G
Sbjct: 53  WTGRC-GICSGSWRFHGAPVPGARRARRALAGGLGGGGG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,668,960
Number of Sequences: 37544
Number of extensions: 617035
Number of successful extensions: 1477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)