Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0574.Seq
         (989 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   4.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   9.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 625 AEETPVTPQPPDILLGPLF-NDVQNAKLFPDQKTFADAVPTAI 500
           AEE  + P+    L G L  N+    K FP  K   D +PT I
Sbjct: 859 AEELKIVPEELVPLEGNLMINNKYALKFFPFDKHILDKLPTLI 901


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 133 PNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLP 20
           P  NR  Y+S+ +PP   L  E   + E       Y+P
Sbjct: 97  PGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIP 134



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 133 PNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLP 20
           P  NR  Y+S+ +PP   L  E   + E       Y+P
Sbjct: 153 PGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIP 190


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 133 PNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLP 20
           P  NR  Y+ + +PP   L  E  ++ E       Y+P
Sbjct: 70  PGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIP 107


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 202 GHWDKVADMVANFAHEIDTYGH-IPNGNRSYYLSRSQPPFFALMVELLA 59
           G +D +A  +  +  +     + IP+  +SY  S   P F+ L  ++L+
Sbjct: 381 GMYDILARDILGYNFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQKILS 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,169
Number of Sequences: 438
Number of extensions: 6451
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32774469
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)