Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0574.Seq
         (989 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 / ...    64   1e-10
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    29   4.8  
At3g61540.1 68416.m06893 peptidase family protein similar to pro...    29   6.3  

>At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 /
           trehalase, putative similar to trehalase 1 GMTRE1
           GI:4559292 from [Glycine max]
          Length = 626

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = -2

Query: 253 EVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALM 74
           EVYYWDSY+ + GL  S  +     +V N    ++TYG+  NG R+YY +RSQPP  + M
Sbjct: 227 EVYYWDSYWVIKGLMTSQMFTTAKGLVTNLMSLVETYGYALNGARAYYTNRSQPPLLSSM 286

Query: 73  V 71
           V
Sbjct: 287 V 287



 Score = 36.3 bits (80), Expect = 0.031
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = -1

Query: 458 SGFDLRHFVNVNFTLPKEGEKYVPPEGQSLRE---HIDGLWPVLTRSTENT--EKWD--S 300
           +G DL H   V+F     G      E + +RE    + GLW  L+    ++  E  D  +
Sbjct: 152 AGEDLLHHEPVDFVSDPSGF-LSNVENEEVREWAREVHGLWRNLSCRVSDSVRESADRHT 210

Query: 299 LLPLPEPYVVPGGPFRGI 246
           LLPLPEP ++PG  FR +
Sbjct: 211 LLPLPEPVIIPGSRFREV 228


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -2

Query: 208 ESGHWDKVADMVANFAHEI-DTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALK 32
           +S  WDK ADM+   A ++ D   + P+ +   Y+     P    +  LL     D  + 
Sbjct: 201 DSRKWDKEADMIVKVAKDVSDVLSYTPSRDFDDYVGIR--PHITRINSLLCLESSDVRMI 258

Query: 31  QYL-PPG-GSTT 2
             L PPG G TT
Sbjct: 259 GILGPPGIGKTT 270


>At3g61540.1 68416.m06893 peptidase family protein similar to prolyl
           aminopeptidase (proline iminopeptidase) from Aeromonas
           sobria SP|P46547, Propionibacterium freudenreichii
           subsp. shermanii GI:2415704, Hafnia alvei GI:1754489
          Length = 515

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 443 RHFVNVNFTLPKEGEKYVPPEGQSLREHIDGLW 345
           R F  V  ++ + G  YV   G+S  EH+ G W
Sbjct: 42  RRFCRVITSMAEAGSVYVDVAGESKSEHVTGKW 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,147,684
Number of Sequences: 28952
Number of extensions: 456264
Number of successful extensions: 1067
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2411911104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)