Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0569.Seq
         (972 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   1.0  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092     31   1.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.4  
06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070     29   5.6  
07_03_0846 - 21983581-21986055                                         29   7.4  
01_05_0118 + 18335065-18335553                                         28   9.8  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 583 NINAYNLPFAIQLRNCWERAIGAXLSLLRQLAKGGCAARRLSWVT 449
           N+N YNL F +  +   +    A L +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -1

Query: 255 QASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 118
           +A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 429 RAAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
          Length = 842

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
 Frame = +1

Query: 322 HEPNVRNCGSSRGGARYPIRPIVSRI--TIHWPSFYNV------VTGKTLALPNLIALQH 477
           H+P++ +   ++GG R P   I S++   I W   YN        +G    L NL AL+H
Sbjct: 407 HQPSIDDAELAKGGPREPWHDIHSKLEGPIAWDVLYNFEQRWRKQSGHADLLVNLTALEH 466

Query: 478 IPLSPAGV 501
           +   P+ V
Sbjct: 467 LITPPSPV 474


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 397 ITIHWPSFYNVV-TGKTLALPNLIALQH 477
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070
          Length = 832

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +1

Query: 322 HEPNVRNCGSSRGGARYPIRPIVSRI--TIHWPSFYNV------VTGKTLALPNLIALQH 477
           H+P++ +   ++GG R P   I SR+   + W   YN        +G    L NL AL+H
Sbjct: 399 HQPSIDDAELAKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQSGHGDLLVNLTALEH 458

Query: 478 I 480
           +
Sbjct: 459 L 459


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 110 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLA 253
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSA 371


>01_05_0118 + 18335065-18335553
          Length = 162

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -1

Query: 243 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTR--ASRL 70
           A+ G  +  V P  +GG+++ +    ++  K  T RR+ FG+R     +    R  ++ L
Sbjct: 18  AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNREGSNLLLAARRGCSAAL 76

Query: 69  RRSGYNSVRCRGSE*CLCRIRHE 1
               ++  +  G++ C+  IR +
Sbjct: 77  LARRHSVEQAAGADACVIGIRKD 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,454,789
Number of Sequences: 37544
Number of extensions: 568580
Number of successful extensions: 1358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)