Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0566.Seq
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    32   0.53 
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    31   1.2  
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625     30   2.8  
01_05_0421 + 21990034-21990392,21991691-21992681                       30   2.8  
12_01_0347 + 2658545-2659309                                           29   5.0  

>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 116 GNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRSICPFGSFA 256
           GN   LS++PSH     CI C   R+  T  R       + P G F+
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPRLLQKLELLMPIGVFS 321


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
 Frame = +2

Query: 32  YLSHLCAGRHRRGQADTFKRTIGG----GTCSGNRNKLSVLPSHQQRISCIRCCPCRLCR 199
           +L +L  GR       T  R+IG      T + +   ++ LP+   ++ C+R   C    
Sbjct: 604 HLKYLSFGRIFSSCIYTLPRSIGKLHGLQTLNMSSTYIATLPTEISKLQCLRTLRCTRVS 663

Query: 200 TGGRFS------CLCRSICPFGSFAPYLAAP--AGYVAV*YQTAKSCLSDN 328
               FS      CL  ++C    F P +++   A  +A  +   KSC S++
Sbjct: 664 NNNNFSINHPVKCLTNTMCLPNIFTPSVSSDNRAKQIAELHMATKSCWSES 714


>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
          Length = 768

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 246 PKGQMERHRQLKRPPVR--HKRQGQQRMQLI 160
           P+G    HR+L  PP+R  H+R G+Q   ++
Sbjct: 134 PRGAHFNHRRLHHPPIRLKHRRDGEQPANVV 164


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 237 QMERHRQLKRPPVRHKRQGQQRMQLIRC*C 148
           Q + H+ + + P +H++Q QQR QL++  C
Sbjct: 187 QQQHHQDVMQSPHQHQQQQQQRQQLVQQNC 216


>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 50  AGRHRRGQADTFKRTIGGGTCSG 118
           A RHRR   +T  R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,148
Number of Sequences: 37544
Number of extensions: 397756
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)