Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0566.Seq
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical
           protein F43B10.1 protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 454 LQRRDWENPGVTQLNRLADIPLSPAGVIAKRPAPIGPSQQL 576
           L+R+  E+P  T LN LA I   PA +IAK+   + PSQ L
Sbjct: 211 LRRKSIESPR-TFLNGLAGIESLPAVIIAKKDNNVNPSQIL 250


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 740 EQQXNPXPGXILWNYKDFADXRPNG*KNELI*QKFNANF 624
           EQ      G I+W++K   D  P+   +++  QKFN NF
Sbjct: 191 EQLEYDEDGNIIWSWKKVIDPLPDIDHSQIQYQKFNKNF 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,329,482
Number of Sequences: 27780
Number of extensions: 321313
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)