Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0563.Seq
(939 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 102 4e-22
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 102 5e-22
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 65 7e-11
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 33 0.43
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 31 1.3
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 31 1.7
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 30 2.3
09_02_0036 + 3217163-3217584,3217752-3218322 30 2.3
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 29 4.0
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 7.1
08_01_0998 - 10136050-10138356 28 9.3
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 102 bits (245), Expect = 4e-22
Identities = 47/78 (60%), Positives = 63/78 (80%)
Frame = +3
Query: 9 AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
+KGK ++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L ++G
Sbjct: 29 SKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRG 88
Query: 189 LIKQVVQHHGQVIYTRAT 242
LI+ V H Q IYTRAT
Sbjct: 89 LIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 102 bits (244), Expect = 5e-22
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +3
Query: 9 AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
+KGK ++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L +G
Sbjct: 29 SKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRG 88
Query: 189 LIKQVVQHHGQVIYTRAT 242
LI+ V H Q IYTRAT
Sbjct: 89 LIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 65.3 bits (152), Expect = 7e-11
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3
Query: 9 AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 137
+KGK ++K+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 963 SKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 138 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 242
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 32.7 bits (71), Expect = 0.43
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 105 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDQS 260
+TPAV E+ + + AR+ L + RE I+ +QH+ Q+++ +K D S
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLDQLS 664
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 105 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDQS 260
ITPAV E+ + + A++ L + RE+ I+ +Q + Q++Y +K D S
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLDQLS 167
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +3
Query: 102 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDQS 260
++TPA E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D S
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLDQLS 219
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +3
Query: 102 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDQS 260
+ITPA+ E+ + + A++ + + RE+ +I+ +Q + Q+++ K D S
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLDQLS 289
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 342 ITIHWPSFYNVV-TGKTLALPNLIALQH 422
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 102 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDQS 260
++TPAV E+ + + A+ L E RE+ I+ +Q + Q+++ +K D S
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLDQLS 651
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 674 RTWTPTSXGEKPSYXGDGPLREPSP*SSFLGPGAVKXLNRXPKGXPRFKTXR 829
+T TP P+ P R PSP S + G+ LNR +G KT R
Sbjct: 197 KTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTPALNR-TRGPSPVKTNR 247
>08_01_0998 - 10136050-10138356
Length = 768
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 193 MRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 14
+R L++ AL + R N+ TAGV++ T + +Y+ LS+N + ++ P
Sbjct: 100 LRALDLAAFPALAKLDLRRNNI---TAGVVAANVSTRASNLTYLDLSDNAFAGHILDVLP 156
Query: 13 LA 8
L+
Sbjct: 157 LS 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,930,769
Number of Sequences: 37544
Number of extensions: 506500
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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