Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0563.Seq
         (939 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   156   4e-38
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   156   4e-38
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   156   4e-38
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   154   2e-37
AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-P...    29   7.0  
AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-P...    29   7.0  
AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-P...    29   7.0  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/82 (90%), Positives = 79/82 (96%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGKVRDKLNNQVLFDK TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIELREKG
Sbjct: 35  SKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKG 94

Query: 189 LIKQVVQHHGQVIYTRATKGDD 254
           LIKQVVQHH QVIYTRATKGD+
Sbjct: 95  LIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/82 (90%), Positives = 79/82 (96%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGKVRDKLNNQVLFDK TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIELREKG
Sbjct: 35  SKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKG 94

Query: 189 LIKQVVQHHGQVIYTRATKGDD 254
           LIKQVVQHH QVIYTRATKGD+
Sbjct: 95  LIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/82 (90%), Positives = 79/82 (96%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGKVRDKLNNQVLFDK TYEKLYKEVP YKLITP+VVSERLK+RGSLA+RALIELREKG
Sbjct: 35  SKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKG 94

Query: 189 LIKQVVQHHGQVIYTRATKGDD 254
           LIKQVVQHH QVIYTRATKGD+
Sbjct: 95  LIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  154 bits (373), Expect = 2e-37
 Identities = 73/82 (89%), Positives = 78/82 (95%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGKVRDKLNNQVLFDK TYEKLYKEVP YKLITP+VVSERLK+RGSL +RALIELREKG
Sbjct: 31  SKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLDKRALIELREKG 90

Query: 189 LIKQVVQHHGQVIYTRATKGDD 254
           LIKQVVQHH QVIYTRATKGD+
Sbjct: 91  LIKQVVQHHSQVIYTRATKGDE 112


>AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-PB,
           isoform B protein.
          Length = 1257

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 378 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 491
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 26  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 63


>AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-PC,
           isoform C protein.
          Length = 1294

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 378 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 491
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 63  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 100


>AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-PD,
           isoform D protein.
          Length = 1272

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 378 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 491
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 41  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 78


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,863,683
Number of Sequences: 53049
Number of extensions: 844999
Number of successful extensions: 1926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1926
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4648779081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)