Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0563.Seq
         (939 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   126   2e-29
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    31   1.2  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha pro...    28   8.4  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  126 bits (304), Expect = 2e-29
 Identities = 61/82 (74%), Positives = 69/82 (84%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGKVRDKLNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KG
Sbjct: 32  SKGKVRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKG 91

Query: 189 LIKQVVQHHGQVIYTRATKGDD 254
           L+K VV HHGQV+YTRATK  D
Sbjct: 92  LVKCVVHHHGQVVYTRATKEAD 113


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 622 SILLIYKGFCRFRPYWLKNELI*QKFNANFNKILTLTIAIRHSXAQLLGRAIGAG 458
           S+L I K    F P W KN LI QKF   +  +L L   ++++    L    G G
Sbjct: 123 SLLAIEKFLIYFFPSWEKNVLIVQKFVQKYILLLYLGCCLKYALLYALESWFGGG 177


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   AAKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 152
           A    V  K  N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 683 AVASMVYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical
           protein ZK550.4 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 645 SSLEQESTIKERGLQRQXAKNRLIXAMAHYVNH 743
           +SL+ E  +KER + ++   NR +  + +Y+N+
Sbjct: 77  ASLKAEKLVKERTITQKNENNRTVSIIFYYINY 109


>Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha
           protein protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 645 SSLEQESTIKERGLQRQXAKNRLIXAMAHYVNH 743
           +SL+ E  +KER + ++   NR +  + +Y+N+
Sbjct: 77  ASLKAEKLVKERTITQKNENNRTVSIIFYYINY 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,180
Number of Sequences: 27780
Number of extensions: 436088
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)