Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0563.Seq
         (939 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative          102   3e-22
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...   101   9e-22
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)           101   9e-22
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            95   8e-20
At4g27630.1 68417.m03971 expressed protein                             31   1.5  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    29   5.9  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   5.9  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.8  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score =  102 bits (245), Expect = 3e-22
 Identities = 46/80 (57%), Positives = 62/80 (77%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGK ++K+NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  KG
Sbjct: 29  SKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKG 88

Query: 189 LIKQVVQHHGQVIYTRATKG 248
            I+ V  H  Q IYTRAT G
Sbjct: 89  TIRMVSAHSSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score =  101 bits (241), Expect = 9e-22
 Identities = 44/78 (56%), Positives = 62/78 (79%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGK ++K+NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KG
Sbjct: 29  SKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKG 88

Query: 189 LIKQVVQHHGQVIYTRAT 242
           +I+ V  H  Q IYTRAT
Sbjct: 89  VIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score =  101 bits (241), Expect = 9e-22
 Identities = 45/78 (57%), Positives = 62/78 (79%)
 Frame = +3

Query: 9   AKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           +KGK ++K+NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KG
Sbjct: 29  SKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKG 88

Query: 189 LIKQVVQHHGQVIYTRAT 242
           LI+ V  H  Q IYTRAT
Sbjct: 89  LIRMVSAHSSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 42/80 (52%), Positives = 61/80 (76%)
 Frame = +3

Query: 3   RAAKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRE 182
           + +KGK ++K+NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L  
Sbjct: 43  KRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMV 102

Query: 183 KGLIKQVVQHHGQVIYTRAT 242
           KG I+ V  H  Q I TRAT
Sbjct: 103 KGTIRMVSTHSSQQINTRAT 122


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 226 ITCPWCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 56
           I  P CWTT L  PF L    ++     R   +  T   V+S +   +L  +SY+ L
Sbjct: 4   ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 212  VLDYLFDETFFPKFDECSSRQGTSDL*PFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 36
            VLDYL    FF  F +    Q T DL     ++     V   F L +FL C  I  H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368

Query: 35   QLVTNF 18
            +  TNF
Sbjct: 1369 EDYTNF 1374


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 15  GKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKG 188
           GKV D L    LF+K   +        +K+ T  +      +RG +A + +I ++EKG
Sbjct: 511 GKVEDALMINELFNKSGVDT------SFKMFTSLIYGSITLMRGDIAAKLIIRMQEKG 562


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 327 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAXEWRM 506
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA   R 
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRD 635

Query: 507 AIV 515
            I+
Sbjct: 636 LIM 638


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,739
Number of Sequences: 28952
Number of extensions: 392011
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)