Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0558.Seq
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    30   0.55 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.9  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 387  PGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQLXH-SVPPKKTP 521
            P  P          V+PLL   SG+++SG+PA  L   +VPP   P
Sbjct: 1003 PNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPP 1048


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 607 VNPDVRWSSLPVSPSALRCSTPRWKSRR-PGVFFGGTLCXSWRAGRPLAVLPLSFA 443
           ++P + +++  VSPS+L      W+SR+  G    G     +       +LPLSFA
Sbjct: 15  IHPALHYATYRVSPSSLHIRLSSWRSRKQTGCLIKGIPLFLFFFFFESFLLPLSFA 70


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 417 FYQLVQPLLAKLSGNTASGLPARQLXHSVPPKKTPGRLDFQRGVLQRNA 563
           F+  +  L+A + G T S L  R L    P  + PG ++     LQRN+
Sbjct: 100 FFMWITFLIA-IVGITTSILKKRMLKEYQPAAEAPGAMEDPEQALQRNS 147


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 816 PSCRXKLKPRQNDLPVXSQNLXIAEFPXLQASEQGVKTGSTST 688
           P+C  KL   +  L    +NL + +   LQA  Q   +  TST
Sbjct: 614 PNCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,074
Number of Sequences: 5004
Number of extensions: 65829
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)