Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0558.Seq
(949 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 64 2e-10
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 32 0.77
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 29 4.1
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 4.1
04_01_0359 + 4711289-4713052,4713423-4713950 29 4.1
08_02_1435 + 27079184-27082006 29 5.4
05_04_0114 + 18090593-18092248 28 9.4
01_07_0241 + 42231224-42232615 28 9.4
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 64.1 bits (149), Expect = 2e-10
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIR 177
+ V V R+ +A+FSTGDEL P L GQI D+NR + Q C+V++LGI +
Sbjct: 171 VTTVKVYRRPTIAVFSTGDELVEPATASLSRGQIRDSNRAMLIAAAIQHKCKVVDLGIAK 230
Query: 178 DDPHALRAAFIEA-DSQADVVISSGGVQWVRRITPKRFLKSWGR 306
D +L+ A S AD++++SGGV R K L S G+
Sbjct: 231 DTEESLKEHMDAALSSDADIILTSGGVSMGDRDLVKPCLASMGK 274
Score = 39.5 bits (88), Expect = 0.004
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Frame = +3
Query: 255 SVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKL---------SNSWFCGLPGNPV 401
S+G+ D K L +G+I F K+ +KPGKP F ++ GLPGNPV
Sbjct: 258 SMGDRDLVKPCLASMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGLPGNPV 315
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 169 IIRDDPHALRAAFIEADSQADVVISSGGVQWVRRITPKRFLKSWGRSPSGSWRLNQVNRS 348
I +DP+++ F+ ADS +VI + W ++ R+ ++ G + S W + + S
Sbjct: 59 ISTNDPYSMNYRFLAADSLQKLVILAALAVWHNLLS--RYRRNGGAAASLDWTITLFSLS 116
Query: 349 RSVNSAIAGSAACRA 393
N+ + G RA
Sbjct: 117 TLPNTLVMGIPLLRA 131
>07_03_0631 + 20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -1
Query: 262 PTEHRRN*SPHPPGCRLQ*MRRAGHGDRRG 173
P E RR SP P RL RR G G RRG
Sbjct: 940 PAEERRGSSPASPRHRLPRERRHGSGARRG 969
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = -2
Query: 894 GVCXNTAKXEKPKPPSXIXXTREXFRPSCRXKLKPRQNDLPVXSQNLXIAEF--PXLQAS 721
GV N PPS I T E F+ SC P + S +L F P +Q
Sbjct: 651 GVSENIFSSSADIPPSMIADTMETFQASCLSDCLPNSIQEFISSPDLNSLTFLSPDMQNL 710
Query: 720 EQGVKTGSTSTHSPNXHIAAIAFQHDKAVAEA 625
E ++ ++ S + ++F + A A
Sbjct: 711 EVQLQHDGSNLPSTSNSFVQMSFSEESASQSA 742
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 103 DTNRLAVHLMLEQLGCEVINL 165
DTNR H +LE+LGC V+++
Sbjct: 649 DTNRAVTHKLLEKLGCLVLSV 669
>08_02_1435 + 27079184-27082006
Length = 940
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 196 RAAFIEADSQADVVISSGGVQWVRRITPKRFLK-SW 300
R +F++ S VI++ QWV ++T R+L SW
Sbjct: 144 RLSFLDLSSSGSHVITADDFQWVSKLTSLRYLDLSW 179
>05_04_0114 + 18090593-18092248
Length = 551
Score = 28.3 bits (60), Expect = 9.4
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 199 AAFIEAD-SQADVVISSGGV---QWVRRITPKRFLKSWGRSPSGSWRLNQVNRSRSVNSA 366
A +EA+ + VV GGV QWV + R + + P G RL VN S SA
Sbjct: 194 AEVMEAERAVVHVVDLGGGVDANQWVELV---RLVAARPGGPPGLLRLTVVNESEDFLSA 250
Query: 367 IAGSAACRATR 399
+A A A R
Sbjct: 251 VAAYVAAEAQR 261
>01_07_0241 + 42231224-42232615
Length = 463
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 565 SALRCSTPRWKSRRPGVFFG-GTLCXSWRAGRPLAVLPLSFASKGCTS**KVSVAETGLP 389
S R + R R G F G C + RAG P A L A C S ++ TG+P
Sbjct: 51 SVARAALLRLNPARLGPSFAFGFFCTNHRAGAPCADFLLGVAVVYCNSGAGITAVTTGIP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,400,907
Number of Sequences: 37544
Number of extensions: 544429
Number of successful extensions: 1446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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