Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0558.Seq
         (949 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15)                35   0.084
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        30   3.1  

>SB_30068| Best HMM Match : MoeA_C (HMM E-Value=2.9e-15)
          Length = 158

 Score = 35.1 bits (77), Expect = 0.084
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 390 GNPVSATLTFYQLVQPLLAKLSGNTASGLPARQLXHSVPPKKTPGRLDFQRGVLQRNAD 566
           GNPVSA +TFY  V P L KL+G+    L   +   +   +  P R ++ R VL    D
Sbjct: 48  GNPVSAMVTFYLFVLPALRKLAGHQFPHLTKIKAKLAKSVRLDP-RPEYHRAVLSWQPD 105


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 170  LSATIPMPCAPHLLKPTARR 229
            L   +P+ C PHLL P ARR
Sbjct: 1374 LEEALPLACQPHLLHPNARR 1393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,214,815
Number of Sequences: 59808
Number of extensions: 572091
Number of successful extensions: 1398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)