Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0558.Seq
         (949 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   5.8  
AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    24   7.7  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 221 LSASINAARRAWGSSRIIPK 162
           L+   NA    WGSSR  PK
Sbjct: 119 LAGDFNAMHLDWGSSRTCPK 138


>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 598 QGSHIFSSFSLGNCFIVLERDRGNVXIGRMGGSRTR 705
           +GS    +  LGN    L  +     IG+MGG++ R
Sbjct: 23  EGSGQMDAMDLGNALRALNLNPTIELIGKMGGTQKR 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,438
Number of Sequences: 2352
Number of extensions: 16429
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103776201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)