Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0558.Seq
(949 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030016-1|AAH30016.1| 769|Homo sapiens gephyrin protein. 65 4e-10
AJ272343-1|CAC10537.1| 769|Homo sapiens gephyrin protein. 65 4e-10
AJ272033-1|CAC81240.1| 736|Homo sapiens gephyrin protein. 65 4e-10
AF272663-1|AAF81785.1| 736|Homo sapiens gephyrin protein. 65 4e-10
AB037806-1|BAA92623.1| 768|Homo sapiens KIAA1385 protein protein. 65 4e-10
>BC030016-1|AAH30016.1| 769|Homo sapiens gephyrin protein.
Length = 769
Score = 64.9 bits (151), Expect = 4e-10
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRD 180
+ EV V + VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D
Sbjct: 523 VTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGD 582
Query: 181 DPHALRAAFIEADSQADVVISSGGV 255
+P L A E S+ADV+I+SGGV
Sbjct: 583 NPDDLLNALNEGISRADVIITSGGV 607
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 SVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----NSWFCGLPGNPVSATLT 416
S+GE DY K +L+ +L +I F ++ +KPG P F L LPGNPVSA +T
Sbjct: 608 SMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 667
Query: 417 FYQLVQPLLAKLSG 458
V P L K+ G
Sbjct: 668 CNLFVVPALRKMQG 681
>AJ272343-1|CAC10537.1| 769|Homo sapiens gephyrin protein.
Length = 769
Score = 64.9 bits (151), Expect = 4e-10
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRD 180
+ EV V + VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D
Sbjct: 523 VTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGD 582
Query: 181 DPHALRAAFIEADSQADVVISSGGV 255
+P L A E S+ADV+I+SGGV
Sbjct: 583 NPDDLLNALNEGISRADVIITSGGV 607
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 SVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----NSWFCGLPGNPVSATLT 416
S+GE DY K +L+ +L +I F ++ +KPG P F L LPGNPVSA +T
Sbjct: 608 SMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 667
Query: 417 FYQLVQPLLAKLSG 458
V P L K+ G
Sbjct: 668 CNLFVVPALRKMQG 681
>AJ272033-1|CAC81240.1| 736|Homo sapiens gephyrin protein.
Length = 736
Score = 64.9 bits (151), Expect = 4e-10
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRD 180
+ EV V + VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D
Sbjct: 490 VTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGD 549
Query: 181 DPHALRAAFIEADSQADVVISSGGV 255
+P L A E S+ADV+I+SGGV
Sbjct: 550 NPDDLLNALNEGISRADVIITSGGV 574
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 SVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----NSWFCGLPGNPVSATLT 416
S+GE DY K +L+ +L +I F ++ +KPG P F L LPGNPVSA +T
Sbjct: 575 SMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 634
Query: 417 FYQLVQPLLAKLSG 458
V P L K+ G
Sbjct: 635 CNLFVVPALRKMQG 648
>AF272663-1|AAF81785.1| 736|Homo sapiens gephyrin protein.
Length = 736
Score = 64.9 bits (151), Expect = 4e-10
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRD 180
+ EV V + VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D
Sbjct: 490 VTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGD 549
Query: 181 DPHALRAAFIEADSQADVVISSGGV 255
+P L A E S+ADV+I+SGGV
Sbjct: 550 NPDDLLNALNEGISRADVIITSGGV 574
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 SVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----NSWFCGLPGNPVSATLT 416
S+GE DY K +L+ +L +I F ++ +KPG P F L LPGNPVSA +T
Sbjct: 575 SMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 634
Query: 417 FYQLVQPLLAKLSG 458
V P L K+ G
Sbjct: 635 CNLFVVPALRKMQG 648
>AB037806-1|BAA92623.1| 768|Homo sapiens KIAA1385 protein protein.
Length = 768
Score = 64.9 bits (151), Expect = 4e-10
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 IAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRD 180
+ EV V + VA+ STG+EL P L G+I D+NR + +++ G INLGI+ D
Sbjct: 522 VTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGD 581
Query: 181 DPHALRAAFIEADSQADVVISSGGV 255
+P L A E S+ADV+I+SGGV
Sbjct: 582 NPDDLLNALNEGISRADVIITSGGV 606
Score = 47.6 bits (108), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 SVGEADYTKTILE-EL-GEIAFWKLAIKPGKPFAFGKLS----NSWFCGLPGNPVSATLT 416
S+GE DY K +L+ +L +I F ++ +KPG P F L LPGNPVSA +T
Sbjct: 607 SMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 666
Query: 417 FYQLVQPLLAKLSG 458
V P L K+ G
Sbjct: 667 CNLFVVPALRKMQG 680
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,116,578
Number of Sequences: 237096
Number of extensions: 2872166
Number of successful extensions: 6307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6307
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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