Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0558.Seq
         (949 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical pr...    42   6e-04
Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical pr...    42   6e-04
U64852-8|AAB04971.3|  168|Caenorhabditis elegans Molybdenum cofa...    34   0.13 

>Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   IAEVPVIRKVRVALFSTGDELQLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIR 177
           I  + V +K  V + STG EL  P  + +  G + D+N   +  + ++ G  VI+ G + 
Sbjct: 182 IRTIKVYKKPVVTVISTGSELVSPMVENVPLGMVRDSNAPQLVALFKEHGFNVIDGGRVV 241

Query: 178 DDPHALRAAFIEADSQADVVISSGGV 255
           DD   L     E    +DV++++GGV
Sbjct: 242 DDKEGLDKKLTECLEHSDVIVTTGGV 267



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = +3

Query: 255 SVGEADYTKTILEELG-EIAFWKLAIKPGKPFAFGKLSNSW------FCGLPGNPVSATL 413
           S+GE DY K  L  LG +I F ++++KPG P       ++          LPGNP SA +
Sbjct: 268 SMGEQDYMKNALLHLGFKIEFGRVSMKPGLPCTVATRESASERKLKVVLALPGNPASAWV 327

Query: 414 TFYQLVQPLLAKLSG 458
             +    PL+  +SG
Sbjct: 328 CSHLFAVPLIRDMSG 342


>Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   IAEVPVIRKVRVALFSTGDELQLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIR 177
           I  + V +K  V + STG EL  P  + +  G + D+N   +  + ++ G  VI+ G + 
Sbjct: 182 IRTIKVYKKPVVTVISTGSELVSPMVENVPLGMVRDSNAPQLVALFKEHGFNVIDGGRVV 241

Query: 178 DDPHALRAAFIEADSQADVVISSGGV 255
           DD   L     E    +DV++++GGV
Sbjct: 242 DDKEGLDKKLTECLEHSDVIVTTGGV 267



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = +3

Query: 255 SVGEADYTKTILEELG-EIAFWKLAIKPGKPFAFGKLSNSW------FCGLPGNPVSATL 413
           S+GE DY K  L  LG +I F ++++KPG P       ++          LPGNP SA +
Sbjct: 268 SMGEQDYMKNALLHLGFKIEFGRVSMKPGLPCTVATRESASERKLKVVLALPGNPASAWV 327

Query: 414 TFYQLVQPLLAKLSG 458
             +    PL+  +SG
Sbjct: 328 CSHLFAVPLIRDMSG 342


>U64852-8|AAB04971.3|  168|Caenorhabditis elegans Molybdenum
           cofactor biosynthesisprotein 2 protein.
          Length = 168

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 169 IIRDDPHALRAAFIEADSQADVVISSGGVQWV-RRITPKRFLKSWGRSPSG 318
           ++ DD  A+  A +E    ADV++++GG  +  R +TP+  LK   R  SG
Sbjct: 46  VVPDDVTAIHDALVEQSKFADVILTTGGTGFAPRDVTPEATLKVIDRRCSG 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,724,125
Number of Sequences: 27780
Number of extensions: 399833
Number of successful extensions: 1060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)