Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0558.Seq
         (949 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...    64   1e-10
At3g19800.1 68416.m02508 expressed protein                             29   3.4  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    29   4.5  
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    28   7.9  

>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
           molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
           identical to SP|Q39054 Molybdopterin biosynthesis CNX1
           protein (Molybdenum cofactor biosynthesis enzyme CNX1)
           {Arabidopsis thaliana}
          Length = 670

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = +1

Query: 34  VALFSTGDELQLP-GQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFI 210
           VA+ STGDEL  P    LG GQI D+NR  +   + Q  C+V++LGI+RDD   L     
Sbjct: 193 VAILSTGDELVEPTAGTLGRGQIRDSNRAMLVAAVMQQQCKVVDLGIVRDDRKELEKVLD 252

Query: 211 EA-DSQADVVISSGGVQWVRRITPKRFLKSWGR 306
           EA  S  D++++SGGV    R   K  L+  G+
Sbjct: 253 EAVSSGVDIILTSGGVSMGDRDFVKPLLEEKGK 285



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
 Frame = +3

Query: 255 SVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKL----SNSWF------CGLPGNPVS 404
           S+G+ D+ K +LEE G++ F K+ +KPGKP  F ++    + S         GLPGNPVS
Sbjct: 269 SMGDRDFVKPLLEEKGKVYFSKVLMKPGKPLTFAEIRAKPTESMLGKTVLAFGLPGNPVS 328

Query: 405 ATLTFYQLVQPLLAKLSGNTASGLPARQLXHSVPPKKTPGRLDFQRGVLQ-RNADG 569
             + F   V P + +L+G T+      +L    P K  P R +F R +++ ++ DG
Sbjct: 329 CLVCFNIFVVPTIRQLAGWTSPHPLRVRLRLQEPIKSDPIRPEFHRAIIKWKDNDG 384


>At3g19800.1 68416.m02508 expressed protein
          Length = 229

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 302 PQLFKNRFGVIRLTH*TPPELITTSAWLSASINAARRAWGSSRIIPKLITSHPN 141
           P L  ++  V   TH  P   ++     S+ I AA    GSS+ + +LIT  P+
Sbjct: 9   PNLLNSKIKVSGNTHHLPFSSLSKKHQASSPIQAAINGGGSSKTVKRLITLSPS 62


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
 Frame = +1

Query: 166 GIIRDDPHALRAAFIEADSQADVVISSGGV---------QW--VRRITPKRFLKSWGRSP 312
           G   D P++    F+E  S  D V S             +W        K+ L+SW + P
Sbjct: 63  GDSEDSPYSGHGVFVEEQSLTDDVDSGAATMPLPQSDERRWSDTSAYARKKILQSWIQLP 122

Query: 313 SGSWRLNQVNRSRSVNSAIA 372
           +G+W L ++  +    S I+
Sbjct: 123 NGNWELGKILSTSGEESVIS 142


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 307 SPSGSWRLNQVNRSRSVNSAIAGSAACRAT 396
           +PS S   NQ NRS+S +SA+     C A+
Sbjct: 33  APSASSLRNQTNRSKSFSSALRSFRVCSAS 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,901
Number of Sequences: 28952
Number of extensions: 382041
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)