Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0557.Seq
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554     36   0.055
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134...    32   0.67 
02_05_0581 - 30122279-30123124                                         29   6.3  
02_05_0189 + 26590489-26591529                                         29   6.3  
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396...    29   6.3  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   6.3  
09_02_0036 + 3217163-3217584,3217752-3218322                           28   8.3  
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    28   8.3  

>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
          Length = 449

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 298 HPLRAALSSNPTLRRSLSPRPSVATGLAPSTGKRP 194
           HP+  A SS+P   RSL P PSVAT +A      P
Sbjct: 31  HPIFGAASSSPIAHRSLLPTPSVATAVAVQVDPPP 65


>07_03_0066 -
           13011785-13011998,13012570-13012730,13013396-13013464,
           13014228-13014449
          Length = 221

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -1

Query: 349 GYRAPPSRSYLALDGVYHPLRAALSSNPTLRRSLSPRPSVATGLAPSTGKRPRSRRTWT 173
           G RA  +  Y   D  +  LRA + +NP     LSP P+  T   P T   P     WT
Sbjct: 5   GERAAEAEEYHCHDFEWEDLRAEVEANPAFSYHLSPFPT--TVGTPETPPPPPPSEAWT 61


>02_05_0581 - 30122279-30123124
          Length = 281

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +2

Query: 395 LQRRDWENXGVTQLNRLAAHPPFASWRNSEEARTDRPSNSCAPEWR 532
           L  R+W      +L RLA    F  W         R  +SC   WR
Sbjct: 101 LPEREWTAEEDERLRRLAKENLFRQWWKVAREMPGRSGDSCRARWR 146


>02_05_0189 + 26590489-26591529
          Length = 346

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 298 HPLRAALSSNPTLRRSLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVI 119
           HP    L    T   + SP PS  T LA   G+R   R   + V   +  ++   T+P +
Sbjct: 7   HPSSNLLLPTTTALPNPSPNPSRVTPLASGRGRRGHHRVCASSVAPAQPASVAQPTAPAL 66


>01_06_0809 -
           32137202-32138128,32138247-32138631,32139503-32139607,
           32139737-32139770,32139856-32140098,32140187-32140247
          Length = 584

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 358 GRIGYRAPPSRSYLALDGVYHPLRAALSSNPTLRRSLSPRPSVATGL-APSTGKRPRS 188
           G++ +R   + +  A  G   PLR +L  + TL  +  P PS++T       G  PRS
Sbjct: 363 GKVAWRQSAAENSHASRGPPRPLRRSLQVDRTLLAAAPPLPSLSTSFDITMQGLDPRS 420


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 59  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 154
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 372 ITIHWPSFYNVV-TGKTXALPNLIALQH 452
           I+  W  F N+V +G T ++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -1

Query: 343 RAPPSRSYLAL-DGVYHPLRAALSSNPTLRRSLSP-RPSVATGLAPSTG-KRPRSRRTWT 173
           R P +R    +   +  P R + +    + R ++P  PS+AT + PST  +RP S++   
Sbjct: 366 RRPMTRELAPVHSSIATPRRPSTAERRPITRGMAPMHPSIATPVRPSTAERRPTSKQMAQ 425

Query: 172 GVVATRKRNLPNT 134
             V     + P+T
Sbjct: 426 KHVGMATPSRPST 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,729,245
Number of Sequences: 37544
Number of extensions: 559590
Number of successful extensions: 1565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)