Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0557.Seq
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    33   0.26 
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -1

Query: 337 PPSRSYLALDGVYHPLRAALSSNPTLRRSLSPRPSVATGLAPSTGKRPRSRRTWTGVVAT 158
           P +R Y+A            +  PT RR+ + R +  T  AP+T +   +R T T +  T
Sbjct: 247 PRTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRLTTARAT-TPLATT 305

Query: 157 RKRNLPNTTSP 125
            +   P+ T+P
Sbjct: 306 SRPTTPSPTTP 316


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 365 HYRANWVPGPPLAVIFSLRWSL-PPA*GCTLKQPDSKEVPLA 243
           H RAN++  PPLAV++S+  ++     G     PD KE+ LA
Sbjct: 544 HVRANYLASPPLAVLYSIIGNVNVDINGVLAVTPDGKEIRLA 585


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 346 YRAPPSRSYLA--LDGVYHPLRAALSSNPTLRRSL--SPRPSVATGLAPSTGKRPRSRRT 179
           Y +PP ++YL+  +    +P  +AL  N T   SL  SP+         S G  PR+  T
Sbjct: 162 YTSPPIQNYLSSMISLWSNPFFSALFGNTTGTPSLPFSPQSDTENSRTQSEGSSPRANST 221

Query: 178 WTGVVATRKRNLPN 137
            T      ++ +PN
Sbjct: 222 STPPTTDLEKIVPN 235


>Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical
           protein F31B9.3 protein.
          Length = 214

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -3

Query: 317 SLRWSLPPA*GCTLKQPDSKEVPLAATLRRYGPG-TLYGKTAPF--KTNLDRSRRDEKAE 147
           S+   LP      +  PD + +P+   +++Y PG + Y +      +T L R   DE+  
Sbjct: 92  SIEEMLPQCVDMYVDFPDGQRMPVDEFVKQYAPGPSFYNRLCNMVAETELMREYNDEERR 151

Query: 146 PPE--HHISRYRLKQRDSVL 93
             E   H SR + K+R  +L
Sbjct: 152 KYEENEHKSRMQKKERKELL 171


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 311 RWSLPPA*GCTLKQPDSKEVPLAA-TLRRYGPGTLYGKTAPFKTNLDRSRRDEK 153
           +W++    G T+++ D++ V L+  T++ YG G+ YGK A  +    +  R  K
Sbjct: 44  KWTIDS--GVTMEREDNQRVILSTQTVQEYGEGSEYGKAAREEARRKKYGRQSK 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,683,264
Number of Sequences: 27780
Number of extensions: 427328
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)