Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0557.Seq
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    32   0.56 
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    29   5.2  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   6.9  
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    28   6.9  
At2g44130.1 68415.m05489 kelch repeat-containing F-box family pr...    28   9.1  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    28   9.1  

>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = -3

Query: 419 CFPSHDV-VKRRPVNCNTTHYRANWVPGPPLAVIFSLRWSLPPA*GCTLKQPDSKEVPLA 243
           C P H + V   P N + T  ++ +     +  +  LR SL  + GC   + +SKE  +A
Sbjct: 105 CNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVA 164

Query: 242 ATLRRYGPGTLYGKTAPF---KTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLGYIPV 78
           A     G   + G   P      + ++ R+  +    + H+SR    Q  S+ G +P+
Sbjct: 165 AMEALNGRHIMEGANVPLIVKWADTEKERQARRLLKVQSHVSRLD-PQNPSMFGALPM 221


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 649 NSXDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSPFRCATVGRAIGAGLFAITP 470
           N+ D  G+ P+S +WL  +LI       FN I  +   +S F      R+I   LF+++ 
Sbjct: 473 NAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQF--PEHMRSIANSLFSLSF 530

Query: 469 AG 464
           AG
Sbjct: 531 AG 532


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 247 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 116
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -3

Query: 314 LRWSLPPA*GCTLKQPDSKEVPLAATLRRYGPGTLYGKTAPF---KTNLDRSRRDEKAEP 144
           LR SL  + GC   + +SKE  +AA     G   + G   P      + ++ R+  +   
Sbjct: 132 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLLK 191

Query: 143 PEHHISRYRLKQRDSVLGYIPV 78
            + H+SR    Q  S+ G +P+
Sbjct: 192 VQSHVSRLD-PQNPSMFGALPM 212


>At2g44130.1 68415.m05489 kelch repeat-containing F-box family
           protein very low similarity to SP|Q9ER30 Kelch-related
           protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 409

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 231 TEGRGERDLLRVGL-LESAALSGW*TPSKAKYDREGGARYPIRPIVSRITIHW 386
           TEGR E     VG+ L    LSG+ T S+ ++  +G    P     SRI   W
Sbjct: 235 TEGRDECQGFAVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSWSRIDNVW 287


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 524 QVRNCWKGDRCGPLRYYASWRKGDVLQGD 438
           +V+  W+GD C P+ Y  SW   D +Q D
Sbjct: 383 RVKKNWQGDPCVPVDY--SWEGIDCIQSD 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,921,421
Number of Sequences: 28952
Number of extensions: 414610
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)