Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0555.Seq
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.95 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   1.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   8.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.8  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 83  ARKIRGRPENAGPDPVRNVRRFSRV 157
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 656 RVHY*RTWTPTSKGEKTSYXGDXPLRETITPNSSFLGXSXVKH*IGTL 799
           ++H   T  P S+ EK  Y    PL  ++  + SFL  + +++ + TL
Sbjct: 60  KIHNSSTSFPKSRSEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTL 107


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = +1

Query: 289 PVLRGGARY---PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGV 444
           PV  GG+     P  P+ S ++ H   +    +    +L N I+L      ++PLSP   
Sbjct: 160 PVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRS 219

Query: 445 IAKRPAPIALPNSCA 489
            A+ P+PI L +S A
Sbjct: 220 PARTPSPIRLYSSDA 234


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 682 SPRSLIVDSCSKLEQHSTLSRSILLI 605
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 551 VKSAHFLTNRPKSAKSLINQKNRP 622
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,692,925
Number of Sequences: 5004
Number of extensions: 75254
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)