Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0555.Seq
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.3  
05_07_0223 - 28496877-28497398                                         29   4.1  
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297     29   5.4  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 340 ITIHWPSFYNVV-TGKTLALPNLIALQH 420
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>05_07_0223 - 28496877-28497398
          Length = 173

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 316 PIRPIVSRITIHWPSFYNVVTGKTLALPN--LIALQHIPLSPAGVIAKRPAPIALPNSCA 489
           P   ++ R+  H P+   VV   TLA+    L+ L  + L+ A V      PIAL  S  
Sbjct: 31  PSTTLLRRVQTHAPNSTQVVGFLTLAVSGAVLLLLTGLTLTGAVVALIFLGPIALLTS-- 88

Query: 490 PEWRMAIVSVNILLKFALNFC 552
           P W    V++ +L   AL+ C
Sbjct: 89  PIWVPVAVALFVLAAAALSAC 109


>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
          Length = 311

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 225 NARTSTRPGTAASASRPNPTRPGP 296
           +A T+TR  + A+ +RP PTRP P
Sbjct: 279 SAATTTRNNSGAAPARPVPTRPWP 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,459,835
Number of Sequences: 37544
Number of extensions: 542330
Number of successful extensions: 1565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)