Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0555.Seq
         (941 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031133-3|CAM28211.1|  353|Homo sapiens zinc finger CCCH-type c...    31   4.6  
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    31   6.1  
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   8.0  

>AL031133-3|CAM28211.1|  353|Homo sapiens zinc finger CCCH-type
           containing 12D protein.
          Length = 353

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 183 RPHYIKILTR*NEHNARTSTRPGTAASASRPNPTRPGPQRG 305
           RPH+ ++    +E  A+T  RPG  A   RP P  PG   G
Sbjct: 279 RPHHAQLAVA-DELRAKTGARPGAGAEEQRP-PRAPGGSAG 317


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
           1-like 3 protein.
          Length = 1732

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = -3

Query: 474 KGDRCGPLRYYASWRKGDVLQGD*VG*RQGFPSHDVVKRRPVNCNTTHYRANWVPGP 304
           KGD+C  L+YY   + GD L GD    R G  SH   + +         R    PGP
Sbjct: 125 KGDKC-LLKYYFICQTGDFLDGDAHYERNGNNSHLYQRHKKTKRGVAIARDKMPPGP 180


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 337  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN 480
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPN 1797


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,174,210
Number of Sequences: 237096
Number of extensions: 3085830
Number of successful extensions: 14817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14804
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)