Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0555.Seq
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   9.3  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  RTESCRSRTKRNRHD 76
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 378 SHDVVKRRPVNCNTTHYRANWVPGP 304
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 848 AKFAGFPPXTLNGGSLLGFRFSALR 774
           A FA  P    NGG    FRF A++
Sbjct: 32  ALFAEPPVRVSNGGKEQDFRFEAIQ 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,902
Number of Sequences: 438
Number of extensions: 5984
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)