Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   2.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   6.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   6.1  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 900 FKARPXFLKSLNLWKMDN 847
           FK    FLK+L +W ++N
Sbjct: 10  FKLNTFFLKALTVWHVEN 27


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 642 RRLKVGGITP--VSLAVHTSLTRLDSTSNARFGMLSRKNKLQSN 517
           +R+K G I P  +S ++ TS +   S++N      S +N  +SN
Sbjct: 310 KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 353


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 642 RRLKVGGITP--VSLAVHTSLTRLDSTSNARFGMLSRKNKLQSN 517
           +R+K G I P  +S ++ TS +   S++N      S +N  +SN
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 142


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 642 RRLKVGGITP--VSLAVHTSLTRLDSTSNARFGMLSRKNKLQSN 517
           +R+K G I P  +S ++ TS +   S++N      S +N  +SN
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,304
Number of Sequences: 336
Number of extensions: 3885
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)