Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   5.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   6.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.7  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 914 WXLSPLKPGPISLNP 870
           W    L+PGPISLNP
Sbjct: 552 WLAKILEPGPISLNP 566


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 163 SAFPQPPIYYYINKTYNRID 222
           S+F  PPI YY+N  Y+ ++
Sbjct: 369 SSFSLPPIDYYLNGPYDNVE 388


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 573 STSNARFGMLSRKNKLQSN--VLGNFPNRSEVSELSSQGTS 457
           ST   +FG ++R   + S   V GN  N+S VS  SS+  S
Sbjct: 161 STVPIQFGSITRNAAIPSKPKVSGNMQNKSGVSSYSSKSQS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,544
Number of Sequences: 5004
Number of extensions: 63962
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)