Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922...    29   4.1  
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804...    29   5.4  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    29   5.4  
01_01_0498 - 3666752-3667072,3667670-3668061,3668571-3668912,366...    29   5.4  
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     29   7.1  
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455...    29   7.1  
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           28   9.4  

>03_02_0529 +
           9218734-9218793,9218898-9220050,9220133-9220192,
           9220284-9220363,9220486-9220730,9220815-9221138,
           9221211-9221274,9221968-9222144
          Length = 720

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 376 IIYFHLRSTYYLDIDRKPALRN 441
           ++Y +L S   LD+DRKP+ RN
Sbjct: 333 LLYSYLSSLILLDVDRKPSFRN 354


>10_08_0636 +
           19478723-19478869,19479984-19480212,19480321-19480414,
           19480598-19480721,19480922-19481023,19481103-19481254,
           19481353-19481446,19481642-19481827
          Length = 375

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 926 VFXPWXLSPLKPGPISLNP*IYGKWIIGSEL 834
           +F PW    +K GP+S++P  +G W  G++L
Sbjct: 43  LFWPW--QKVKVGPLSVSPMGFGTWAWGNQL 71


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 435 QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDSR 337
           +G  + NV +VC   M    ++   PGSVHD R
Sbjct: 624 KGMTTQNVMVVCDFDMRFTFVLAGWPGSVHDMR 656


>01_01_0498 -
           3666752-3667072,3667670-3668061,3668571-3668912,
           3669982-3670131,3670211-3670308,3670430-3670489,
           3670605-3670676,3670766-3670909,3671003-3671074,
           3671170-3671302,3671649-3671751
          Length = 628

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 654 YLGLRRLKVGGITPVSLAVHTSLTRLDSTSNARFGMLSRKNKLQSNVLGN 505
           YL L    + G+ P SLA    L  +D + N   G L + +    N++GN
Sbjct: 150 YLKLNNNSLSGVLPDSLAAINGLALVDLSFNNLSGPLPKISSRTFNIVGN 199


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 651 LGLRRLKVGGITPVSLAVHTSLTRLDSTSNARFGMLSRKNKLQSNVLGNFPNR-SEVSEL 475
           L L   ++GG  P  +   + L RLD ++N   G L   +   +N  G+ PN    +++L
Sbjct: 179 LNLSSNQLGGHIPSEIGFLSKLIRLDLSNNNIIGRLD--SLFMTNKPGSIPNSLGNLTKL 236

Query: 474 SSQGTSRRTL--NVPQ 433
           S    SR  L  ++PQ
Sbjct: 237 SFLDLSRNQLSGHIPQ 252


>02_01_0607 -
           4549248-4549290,4550193-4550337,4550438-4551185,
           4551504-4551980,4552066-4552374
          Length = 573

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 432 GWFSINVQIVCGPQMEIYDIVVQCPGSVHDSR 337
           G+ S NV  +C   M     V   PGS HDSR
Sbjct: 463 GYTSQNVLAICDFDMRFIFAVAGWPGSAHDSR 494


>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 654 YLGLRRLKVGGITPVSLAVHTSLTRLDSTSNARFGML 544
           YLGL    +GG  P  L   +SLT LD  SN   G +
Sbjct: 293 YLGLASNNLGGTIPSWLGNLSSLTALDLQSNGFVGCI 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,971,636
Number of Sequences: 37544
Number of extensions: 368264
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)