Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)        32   0.59 
SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.78 
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_59059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 435 QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDS 340
           +G+ SINVQ +C  +    ++V + PG+ HDS
Sbjct: 314 KGFHSINVQAICDNKGLFTNVVAKWPGNAHDS 345


>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
          Length = 427

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 435 QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDS 340
           +G+ SINVQ +C  +    ++V + PG+ HDS
Sbjct: 274 KGFHSINVQAICDNKGLFTNVVAKWPGNAHDS 305


>SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 435 QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDS 340
           +G  SINVQ VC  +    +IV + PGS HD+
Sbjct: 107 KGQHSINVQAVCDNKGLFTNIVARWPGSTHDA 138


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 435  QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDS 340
            +G  +INVQ VC  +    +IV + PGS HD+
Sbjct: 1888 KGQPNINVQAVCDNKGLFTNIVARWPGSTHDA 1919


>SB_59059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 426 FSINVQIVCGPQMEIYDIVVQCPGSVHDSR 337
           +SI VQ V    M+  D+    PGS+HD+R
Sbjct: 95  YSIVVQAVGNASMKFLDVSTGYPGSLHDAR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,764,264
Number of Sequences: 59808
Number of extensions: 461146
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)