Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z68296-3|CAB54197.2|  223|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 274 KEFQMSNLELNKYYQN*IINNARIMHRSRTLHNNIIYFHLRSTYYLDIDR 423
           ++F  SN  ++K   N I   A I+  SR LH   + F   STY   ++R
Sbjct: 44  RKFISSNFAVSKQLGNNIFELASILGISRVLHRTPVIFLQNSTYQYMLNR 93


>Z68296-3|CAB54197.2|  223|Caenorhabditis elegans Hypothetical
           protein C46C2.5 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 536 KINSNQTSLEIFLTGVK*ANCQVKVRRDVP*TF 438
           K+  NQ  L+IFL      NC V V  D+P  F
Sbjct: 6   KLTDNQEMLKIFLIFTVLINCTVSVPADIPSLF 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,381
Number of Sequences: 27780
Number of extensions: 351585
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)