Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0554.Seq
         (947 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25560.1 68416.m03178 protein kinase family protein contains ...    32   0.64 
At4g01220.2 68417.m00161 expressed protein                             31   0.85 
At4g01220.1 68417.m00160 expressed protein                             31   0.85 
At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containi...    30   2.6  
At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containi...    30   2.6  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    29   3.4  
At5g53580.1 68418.m06657 aldo/keto reductase family protein cont...    29   4.5  
At3g55350.1 68416.m06147 expressed protein                             29   4.5  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   6.0  

>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 654 YLGLRRLKVGGITPVSLAVHTSLTRLDSTSNARFGMLSRKNKLQSNVLGNFPNRSEVSEL 475
           YL +    + G  P SLA  T LT LD + N   G + R      NV+GN       +E 
Sbjct: 157 YLRVNNNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFNVMGNSQICPTGTEK 216

Query: 474 SSQGTSRRTLNV 439
              GT  + +++
Sbjct: 217 DCNGTQPKPMSI 228


>At4g01220.2 68417.m00161 expressed protein
          Length = 299

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 947 AFLFF*GVFXPWXLSPLKPGPISLNP*IYGKW 852
           A L   GVF PW  SPL P P  L+P    KW
Sbjct: 48  ALLVILGVFLPWAGSPLFPSPNKLSP-SQSKW 78


>At4g01220.1 68417.m00160 expressed protein
          Length = 360

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 947 AFLFF*GVFXPWXLSPLKPGPISLNP*IYGKW 852
           A L   GVF PW  SPL P P  L+P    KW
Sbjct: 48  ALLVILGVFLPWAGSPLFPSPNKLSP-SQSKW 78


>At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 667 NXQPVPRFKEVKSRRNNTRIFSRSHELNSTRLNLQRAFW 551
           N  P   F+ VK   NN  I  R  E +  +LN++ +FW
Sbjct: 66  NLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFW 104


>At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 667 NXQPVPRFKEVKSRRNNTRIFSRSHELNSTRLNLQRAFW 551
           N  P   F+ VK   NN  I  R  E +  +LN++ +FW
Sbjct: 66  NLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFW 104


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 624 GITPVSLAVHTSLTRLDSTSNARFGMLSRKNKLQSNVLGNFPNRSEVSELSSQGTSRRTL 445
           G  P SLA  T LT LD + N   G + R      NV+GN       +E    GT  + +
Sbjct: 168 GTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFNVMGNSQICPTGTEKDCNGTQPKPM 227

Query: 444 NV 439
           ++
Sbjct: 228 SI 229


>At5g53580.1 68418.m06657 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 365

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 926 VFXPWXLSPLKPGPISLNP*IYGKWIIGSEL 834
           +F PW    +K GP+S++P  +G W  G++L
Sbjct: 33  LFWPW--QKVKMGPLSVSPMGFGTWAWGNQL 61


>At3g55350.1 68416.m06147 expressed protein
          Length = 406

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 426 FSINVQIVCGPQMEIYDIVVQCPGSVHD 343
           FS+ +Q V  P M   D++   PGS++D
Sbjct: 213 FSMTLQAVVDPDMRFLDVIAGWPGSLND 240


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 566 EVESSRVKLV*TAKDTGVIPPTFNLLKPRYGLSVVLEFSAVYLYXNRH 709
           EVE  R ++V   K  G   P  +LL    GLSV +      LY N +
Sbjct: 154 EVEKHRERIVAGDKLRGEFEPLVSLLAKNMGLSVTMPVKCSTLYLNEN 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,914
Number of Sequences: 28952
Number of extensions: 319968
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)