Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0552.Seq
         (920 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.051
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    25   1.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 229 RQRGAQMQLELFNRNNFSIRYWSWNYRGCWHQTC 330
           R+R     +    R+NF   +  WNY  CW   C
Sbjct: 733 RRRFVVAVVGFLRRHNFKGLHLDWNYPVCWQSNC 766



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 229  RQRGAQMQLELFNRNNFSIRYWSWNYRGCWHQTC 330
            R+R     ++    NNF      W Y  CW   C
Sbjct: 1921 RRRFIAHVVDFIETNNFDGLDLDWEYPKCWQVDC 1954



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 229  RQRGAQMQLELFNRNNFSIRYWSWNYRGCWHQTC 330
            R R  +  L+   + NF      W Y  CW   C
Sbjct: 1496 RARFIKHVLQFLEKWNFDGLDLDWEYPKCWQVDC 1529


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 699 RIGYRAPPRRPSRPKVV 649
           ++ +R PPR P +PK+V
Sbjct: 54  KLQFRGPPRTPLQPKLV 70


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +1

Query: 277 FSIRYWSWNYRGCWHQ 324
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,747
Number of Sequences: 336
Number of extensions: 4195
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)