Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0552.Seq
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    26   8.6  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    26   8.6  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 589 DASPVLDHAICKSYPDSSKINDF 657
           +ASPVLD  +C S    S++NDF
Sbjct: 101 NASPVLDQKVCNS-DSLSELNDF 122


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 367 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 468
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 400 VSLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSGIDPDSPLPVTTM 540
           VSL+   T P R   I   + FL   S+F  +LS +  + P+ +T M
Sbjct: 121 VSLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEIPILLTYM 167


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 622 CRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVTGNQGRFRRGSLRNGYHI 470
           C+   +    H+      NF+  +  LPW  R+ G Q      +++NG H+
Sbjct: 71  CQGQNKESLIHMEEDASTNFKLRYYVLPWSRRLQGYQSI----TVQNGSHV 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,838
Number of Sequences: 5004
Number of extensions: 68160
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)