Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0549.Seq
         (950 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    25   1.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.5  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    23   2.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    23   2.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   4.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   4.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   6.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   8.0  

>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 806 NWVTGPPVPTHFIXFISNNL-YLAKXIRNXSXSE 708
           +W T P +PTH    I N L Y    I + + SE
Sbjct: 290 SWATQPVLPTHPYQIIKNQLVYDVPWIASFTKSE 323


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 568 GIYPNSMKPIVEPFASQSTH 627
           GI+P    P+V PF +   H
Sbjct: 194 GIFPGGAPPLVSPFLAAMAH 213


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 806 NWVTGPPVPTHFIXFISN-NLYLAKXIRNXSXSE 708
           +W T P +PTH    I N  +Y    I + + SE
Sbjct: 290 SWATQPVLPTHPYQIIKNQQVYDVPWIASFTKSE 323


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 806 NWVTGPPVPTHFIXFISN-NLYLAKXIRNXSXSE 708
           +W T P +PTH    I N  +Y    I + + SE
Sbjct: 290 SWATQPVLPTHPYQIIKNKQVYDVPWIASFTKSE 323


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 806 NWVTGPPVPTHFIXFISN-NLYLAKXIRNXSXSE 708
           +W T P +PTH    I N  +Y    I + + SE
Sbjct: 290 SWATQPVLPTHPYQMIKNQQVYDVPWIVSFTNSE 323


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 806 NWVTGPPVPTHFIXFISN-NLYLAKXIRNXSXSE 708
           +W T P +PTH    I N  +Y    I + + SE
Sbjct: 290 SWATQPVLPTHPYQMIKNQQVYDVPWIVSFTNSE 323


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 318 GAPTPSQCISSVRIWRV*TIPRTCRFVDV*TSLVSSPRT 434
           GAP+PS   SS+   R  T   T     V TS  S P T
Sbjct: 73  GAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTT 111


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 585 GIWVYSCXFLRWDPSESG 532
           G W   C F  W PS  G
Sbjct: 461 GHWYLDCGFGPWKPSMHG 478


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,172
Number of Sequences: 336
Number of extensions: 4135
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26789147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)