Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0549.Seq
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 47 3e-06
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 44 4e-05
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 43 7e-05
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 36 0.011
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 36 0.011
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 32 0.10
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 28 1.7
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = -3
Query: 513 EDVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYXQKKYIA 334
+ V+LDSWT EQ ++ + GN RA +EA L +D + +FI+ KY KK++
Sbjct: 67 KSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVL 124
Query: 333 KEWVP 319
+P
Sbjct: 125 YPEIP 129
Score = 35.1 bits (77), Expect = 0.015
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 629 LCVDCDAKGSTM-GFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC G C+G+HR+LGVH+S+VK
Sbjct: 27 VCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVK 67
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 601 PRWASWNLGIFLXIPALG---SIGIWV 530
PRWASWNLG+F+ I G S+G+ V
Sbjct: 37 PRWASWNLGVFICIRCSGVHRSLGVHV 63
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
LC DC +G G CA IHR LG H+SKVK SIS+
Sbjct: 22 LCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVK-SISL 65
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 42.7 bits (96), Expect = 7e-05
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -1
Query: 692 TITGSLSEYISANA*XXKATXLCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKV 513
T T S+ + + + +C DC AK T FG C+ HRN+GVHIS V
Sbjct: 2 TATKEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFV 61
Query: 512 K 510
+
Sbjct: 62 R 62
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 35.5 bits (78), Expect = 0.011
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 507 VNLDSWTPEQVVSLQQMGNSRARAVYEANLPD-SFRRPQNDMSLESFIRAKYXQKKYI 337
+ LD + PE V L GNS +YE + D + +N F++ KY K++I
Sbjct: 727 LTLDKFNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRVQFVKDKYLYKRFI 784
Score = 34.3 bits (75), Expect = 0.026
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 626 CVDCDAKGSTMGF-MEFGYIPVXSCAGIHRNLGVHISKVK 510
C DC+ + F + C+GIHR+LG HI+K++
Sbjct: 686 CADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIR 725
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 629 LCVDCDA-KGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC + K T + + C+GIHR+LG HISK +
Sbjct: 729 VCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTR 769
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -3
Query: 501 LDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYXQKKYIAKEWV 322
LDS + + V L ++GN+ VYE L + +P+ + + + ++ + QKKY+ ++
Sbjct: 773 LDSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQ--VKLAFAQKKYVEHAFI 830
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C DCDA G C+G HR LGV S V+
Sbjct: 17 CFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVR 55
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 28.3 bits (60), Expect = 1.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 330 EWVPPQLPKVNWDKEIDEEM 271
EW+ P + K W +E DE++
Sbjct: 50 EWIDPSIKKTEWSREEDEKL 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,616,571
Number of Sequences: 5004
Number of extensions: 68931
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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