Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0549.Seq
(950 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 60 2e-09
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 48 9e-06
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 48 1e-05
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 46 4e-05
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 46 4e-05
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 46 4e-05
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 46 4e-05
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 46 5e-05
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 46 5e-05
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 45 6e-05
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 45 6e-05
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 44 1e-04
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 44 1e-04
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 44 2e-04
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 43 3e-04
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 41 0.001
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 40 0.002
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 39 0.004
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 38 0.007
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 38 0.007
At5g23700.1 68418.m02778 hypothetical protein 29 4.5
At1g07970.1 68414.m00868 expressed protein 29 6.0
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr... 28 7.9
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 28 7.9
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 28 7.9
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 28 7.9
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 28 7.9
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = -3
Query: 501 LDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYXQKKYIAKEWV 322
LD+W PEQV +Q MGN +A + +EA LP ++ R + +E+FIRAKY +K+++++
Sbjct: 73 LDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWVSRGEK 128
Query: 321 PPQLPKVNWDK 289
P+V ++
Sbjct: 129 ARSPPRVEQER 139
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C DC KG + G C+GIHR+LGVHISKV+
Sbjct: 31 CADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 48.0 bits (109), Expect = 9e-06
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -3
Query: 507 VNLDSWTPEQVVSLQQMG-NSRARAVYEANLPDSFRRPQNDMSLESFIRAKYXQKKYIAK 331
V LD W+ E+V S+ ++G N+ A ++YEA LPD+ +P D++ + R ++ + KY +
Sbjct: 70 VTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQ--RMRFIRAKYELQ 127
Query: 330 EWVPPQL 310
E++ P L
Sbjct: 128 EFLKPSL 134
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
+C DC A G C G+HR+LG HISKV +S+++
Sbjct: 29 VCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKV-LSVTL 72
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = -3
Query: 519 QSEDVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 355
Q + LD+W P+QV ++ GN++ +E+ LP F R +D +FIRAKY
Sbjct: 67 QVRSITLDTWLPDQVAFMKSTGNAKGNEYWESELPQHFERSSSD----TFIRAKY 117
Score = 42.3 bits (95), Expect = 5e-04
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C DC +K + G C+GIHR+LGVHIS+V+
Sbjct: 31 CADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVR 69
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = -3
Query: 528 SHLQSE-DVNLDSWTPEQVVSLQQMG-NSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 355
SH+ V LD W+ E+V S+ ++G N+ A ++YEA +P+ +P D S + R ++
Sbjct: 62 SHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQ--RMRF 119
Query: 354 XQKKYIAKEWVPPQL 310
+ KY +E++ P L
Sbjct: 120 IRSKYEHQEFLKPSL 134
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
+C DC A G C G+HR+LG HISKV +S+++
Sbjct: 29 VCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV-LSVTL 72
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = -3
Query: 528 SHLQSE-DVNLDSWTPEQVVSLQQMG-NSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 355
SH+ V LD W+ E+V S+ ++G N+ A ++YEA +P+ +P D S + R ++
Sbjct: 62 SHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQ--RMRF 119
Query: 354 XQKKYIAKEWVPPQL 310
+ KY +E++ P L
Sbjct: 120 IRSKYEHQEFLKPSL 134
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
+C DC A G C G+HR+LG HISKV +S+++
Sbjct: 29 VCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV-LSVTL 72
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = -3
Query: 528 SHLQSE-DVNLDSWTPEQVVSLQQMG-NSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 355
SH+ V LD W+ E+V S+ ++G N+ A ++YEA +P+ +P D S + R ++
Sbjct: 62 SHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQ--RMRF 119
Query: 354 XQKKYIAKEWVPPQL 310
+ KY +E++ P L
Sbjct: 120 IRSKYEHQEFLKPSL 134
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
+C DC A G C G+HR+LG HISKV +S+++
Sbjct: 29 VCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV-LSVTL 72
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = -3
Query: 528 SHLQSE-DVNLDSWTPEQVVSLQQMG-NSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 355
SH+ V LD W+ E+V S+ ++G N+ A ++YEA +P+ +P D S + R ++
Sbjct: 62 SHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQ--RMRF 119
Query: 354 XQKKYIAKEWVPPQL 310
+ KY +E++ P L
Sbjct: 120 IRSKYEHQEFLKPSL 134
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMSISI 495
+C DC A G C G+HR+LG HISKV +S+++
Sbjct: 29 VCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV-LSVTL 72
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C DC A + G + C+GIHRNLGVHISKV+
Sbjct: 535 CADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVR 573
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C DC A + G + C+G+HRNLGVHISKV+
Sbjct: 457 CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR 495
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 45.2 bits (102), Expect = 6e-05
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
C +C+A + G + C+G+HRNLGVHISKV+
Sbjct: 482 CAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVR 520
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK-MSISIR 492
C +C+A + G + C+G+HRNLGVHISKV+ +S+ ++
Sbjct: 482 CAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVK 527
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC+AK T + +G C+ +HR+LGVHIS V+
Sbjct: 24 ICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 504 NLDSWTPEQVVSLQQMGNSRARAVYE 427
NLDSW+ EQ+ + GN+RA+ ++
Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVFFK 91
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC+AK T + +G C+ +HR+LGVHIS V+
Sbjct: 24 ICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 504 NLDSWTPEQVVSLQQMGNSRARAVYE 427
NLDSW+ EQ+ + GN+RA+ ++
Sbjct: 66 NLDSWSSEQLKMMIYGGNNRAQVFFK 91
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC AK T + +G C+ HRNLGVHIS V+
Sbjct: 27 VCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVR 66
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3
Query: 504 NLDSWTPEQVVSLQQMGNSRARAVYE 427
NLDSW+PEQ+ ++ GN+RA+ ++
Sbjct: 69 NLDSWSPEQLRTMMFGGNNRAQVFFK 94
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+C DC AK T + +G C+ +HR+LGVHIS V+
Sbjct: 24 VCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVR 63
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3
Query: 504 NLDSWTPEQVVSLQQMGNSRARAVYE 427
NLDSW+PEQ+ ++ GN+RA+ ++
Sbjct: 66 NLDSWSPEQLRTMMFGGNNRAQVFFK 91
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+CVDC K + +G C+G HR LGVHIS V+
Sbjct: 18 VCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVR 57
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 629 LCVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVK 510
+CVDC K + +G C+G HR LGVHIS V+
Sbjct: 18 VCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVR 57
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKV 513
C DC + + G C+G+HR+LGVHISKV
Sbjct: 62 CADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKV 99
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3
Query: 513 EDVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR-PQNDMS--LESFIRAKYXQKK 343
+ V++ +T ++V LQ GN RAR +Y N +R P+N + + FI+ Y QKK
Sbjct: 62 KSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKK 121
Query: 342 Y 340
Y
Sbjct: 122 Y 122
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMS 504
C++C++ G F +C+GIHR + V MS
Sbjct: 27 CINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMS 67
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3
Query: 513 EDVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR-PQNDMS--LESFIRAKYXQKK 343
+ V++ +T ++V LQ GN RAR +Y N +R P+N + + FI+ Y QKK
Sbjct: 62 KSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKK 121
Query: 342 Y 340
Y
Sbjct: 122 Y 122
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 626 CVDCDAKGSTMGFMEFGYIPVXSCAGIHRNLGVHISKVKMS 504
C++C++ G F +C+GIHR + V MS
Sbjct: 27 CINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMS 67
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 127 RSTXPXHPDTSKTSNGPQISSAWTPPNRTPCPATILVP 14
RS+ P T S+ P S W PP + P I+ P
Sbjct: 120 RSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPP 157
>At1g07970.1 68414.m00868 expressed protein
Length = 693
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 103 DTSKTSNGPQISSAWTPPNRTPCPATILVPNSA 5
D + NG QISS TP + P+ LVP+S+
Sbjct: 196 DKLNSRNGSQISSFSTPSKQMGSPSMYLVPSSS 228
>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 247
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 552 WDPSESGCSHLQSEDVNLDSWTPEQVVS 469
W+PS S LQ+ED DSW E+ +S
Sbjct: 13 WEPS----SFLQNEDFEYDSWPLEEAIS 36
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator of
chromosome condensation (RCC1) family protein similar to
hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 464 SKWETAAPGPCTRRTYQTRSDVHKTTCPWNRSYAPNTXRRNTLR 333
S + T+ P P +SDV K T PW S P R +LR
Sbjct: 958 SSFLTSKPIPMEPAKSLQQSDVEKGTPPWASSETPRKLSRPSLR 1001
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator of
chromosome condensation (RCC1) family protein similar to
hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 464 SKWETAAPGPCTRRTYQTRSDVHKTTCPWNRSYAPNTXRRNTLR 333
S + T+ P P +SDV K T PW S P R +LR
Sbjct: 955 SSFLTSKPIPMEPAKSLQQSDVEKGTPPWASSETPRKLSRPSLR 998
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 274 LFVYFFIPVDFGQLRGHPLLRNVFLLXVFG 363
L+ FF P++FG RG P N+F+L + G
Sbjct: 94 LYSSFFTPLEFGFFRGLP--ENLFILDIAG 121
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 121 TXPXHPDTSKTSNGPQISSAWTPPNRTPCPATILVPN 11
T P P++S N P+ SS PP P P PN
Sbjct: 165 TVPNPPESSSNPNPPESSSNPNPPITIPYPPESSSPN 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,464,599
Number of Sequences: 28952
Number of extensions: 379618
Number of successful extensions: 997
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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