Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0545.Seq
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    23   4.2  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   9.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  

>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 119 TQNCLNLXIYNRNV 160
           ++NCL L +Y RN+
Sbjct: 51  SENCLVLNVYTRNI 64


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 155 NVAIFFCCNFIVVVSRV 205
           N   FFC  FIVV+ ++
Sbjct: 48  NYVTFFCSLFIVVILKL 64


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 208 SHPRHYNNEITTKKYRN---ITIIN 143
           ++P +YN +++   Y+N   I+++N
Sbjct: 360 TYPSYYNQDVSCTHYQNPEYISVVN 384


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,071
Number of Sequences: 336
Number of extensions: 2597
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)