Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0545.Seq
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 96 5e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 75 1e-14
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 65 1e-11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 54 4e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 48 2e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 47 4e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 45 2e-05
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 37 0.003
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 33 0.041
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 33 0.041
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.041
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.054
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 30 0.38
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.7
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 26 6.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.2
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 26 6.2
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 96.3 bits (229), Expect = 5e-21
Identities = 46/67 (68%), Positives = 54/67 (80%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG ERFRTITS+Y GAH IIIV D TDQ SF+NVKQ L+EIDRYA + VN+LLVGNK
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKS 123
Query: 514 DLPLKRL 494
D+ K++
Sbjct: 124 DMVDKKV 130
Score = 79.8 bits (188), Expect = 5e-16
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -1
Query: 512 LATKKVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMAAEIKARVGPPSTGAAPA- 336
+ KKVV++S K++A+ L IPFLETSAK S NVEQAF+TM+ +IK R+G + ++ A
Sbjct: 125 MVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAK 184
Query: 335 GHVKIDQGQPIDTGKSSCC 279
VK+ QG + S+CC
Sbjct: 185 SSVKVGQGTNVSQSSSNCC 203
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 75.4 bits (177), Expect = 1e-14
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG ERFRTIT+AY GA I+++ D TD+ SF NV+ ++++A +NV K+L+GNKC
Sbjct: 65 TAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKC 124
Query: 514 D 512
D
Sbjct: 125 D 125
Score = 45.6 bits (103), Expect = 9e-06
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = -1
Query: 503 KKVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMAAEIK 375
++ V F + A++LG+ FLE SAK + NV++AF T+A EIK
Sbjct: 129 QRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 65.3 bits (152), Expect = 1e-11
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG ER+R ITSAY GA +IV D T Q SF NV + L+E+ +A N+ +LVGNK
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKT 125
Query: 514 D-LPLKRLST 488
D L L+ +ST
Sbjct: 126 DLLHLRAVST 135
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 500 KVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMAAEIKARVGPPSTGAAPAG 333
+ V + +A + + F+ETSA + NVE+AF T+ EI V S A G
Sbjct: 131 RAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDG 186
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 53.6 bits (123), Expect = 4e-08
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG ERFR++ +Y + IIV D T+ SF N ++ +E++ D+V +LVGNK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKT 126
Query: 514 DLPLKRLST 488
DL KR T
Sbjct: 127 DLADKRQVT 135
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 512 LATKKVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMA 387
LA K+ V ++ A++L I +ETSAK NV+ F +A
Sbjct: 128 LADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIA 169
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG ER++++ Y A+ I+V D T S K ++E+ R A + + L GNK
Sbjct: 71 TAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKL 130
Query: 514 DLPLKR 497
DL +R
Sbjct: 131 DLAQER 136
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG E+FR++ Y GA ++V D T++ SF + L +I A + +L G+K
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKS 128
Query: 514 DLPLKR 497
DL +R
Sbjct: 129 DLQNQR 134
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEI-DRYACDNVNKLLVGNK 518
TAG + + + S + G H ++V T + SF VK ++I + + V ++VGNK
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNK 120
Query: 517 CDLPLKRLSTLVQXSNMRNNW 455
DL ++R T + + N W
Sbjct: 121 SDLHMQRAVTAEEGKALANEW 141
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
TAG E+ + Y II+ D T + ++ NV ++ R C+N+ +L GNK
Sbjct: 65 TAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKV 123
Query: 514 DLPLKRL 494
D+ +++
Sbjct: 124 DVKERKV 130
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 33.5 bits (73), Expect = 0.041
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYAC----DNVNKLLV 527
TAG ERF+++ A+ GA ++V D + SF + +E A + +L+
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILL 123
Query: 526 GNKCDL 509
GNK D+
Sbjct: 124 GNKVDV 129
Score = 33.5 bits (73), Expect = 0.041
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 503 KKVVDFSTXKQYAEQLG-IPFLETSAKXSXNVEQAFMTMA 387
K++V S + + G IP+ ETSAK + NV++AF T+A
Sbjct: 133 KRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.5 bits (73), Expect = 0.041
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -1
Query: 512 LATKKVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMAAEIK 375
L ++VV + +Q A+ + ++ETSAK NVE+AF ++ I+
Sbjct: 125 LEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIR 170
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 33.5 bits (73), Expect = 0.041
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEE 569
TAG ERF+++ A+ GA +IV + + SF +V+ +E
Sbjct: 64 TAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.1 bits (72), Expect = 0.054
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVK-QCLEEIDRYACDNVNKLLVGNK 518
TAG E + + AH I++ S NV + +EEI+ C NV +LVG K
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTL-CPNVPFILVGMK 121
Query: 517 CDL 509
DL
Sbjct: 122 ADL 124
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 30.3 bits (65), Expect = 0.38
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Frame = -2
Query: 790 NEGPXIVIPITFXAKLVT---GPPXETSGLXXXSPTAGXERFRTITSAYXXGAHXIIIVX 620
N+ P +P F VT G T GL TAG E + + ++
Sbjct: 26 NKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFD---TAGQEDYDRLRPLSYPQTDVFLVCF 82
Query: 619 DATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKCDL 509
T SF NVK+ + C V L+VG + DL
Sbjct: 83 SVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDL 119
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 500 KVVDFSTXKQYAEQLG-IPFLETSAKXSXNVEQAFMTMAAEIKARVGPPST 351
K++D+ A+++ + +LE SAK + V +AF T AA + P T
Sbjct: 141 KIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF-TEAARVALAAQPRGT 190
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 772 VIPITFXAKLVTGPPXETSGLXXXSPTAGXERFRTITSAYXXG 644
++P+T+ K+ G T+GL + G + TSA G
Sbjct: 61 IVPVTWRVKIADGAKTATTGLSKLAQFGGKSMWVISTSALLLG 103
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 468 ILLXCTKVDNLFSGKSHLLPTSSLFTLSQA*RSISSKHCFTLLN 599
I++ T +D G + ++ + +L T QA R ++KH L+N
Sbjct: 875 IIIFLTNLDYRLEGHTRIIFSKALNTGQQAVRLTATKHLAALIN 918
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 506 TKKVVDFSTXKQYAEQLGI-PFLETSAKXSXNVEQAFMTMAAEIKARVGPPS 354
++K + F + A+++G +LE SAK + V + F T A + P S
Sbjct: 136 SQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPAS 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,410
Number of Sequences: 5004
Number of extensions: 42389
Number of successful extensions: 103
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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