Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0545.Seq
         (884 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            52   3e-08
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    25   4.1  
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    24   5.4  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 25/67 (37%), Positives = 36/67 (53%)
 Frame = -2

Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
           TAG ER+ ++   Y  GA   I+V D  +  SF+  K  ++E+ R A  N+   L GNK 
Sbjct: 80  TAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKA 139

Query: 514 DLPLKRL 494
           DL   R+
Sbjct: 140 DLANSRV 146



 Score = 50.0 bits (114), Expect = 9e-08
 Identities = 27/78 (34%), Positives = 43/78 (55%)
 Frame = -1

Query: 512 LATKKVVDFSTXKQYAEQLGIPFLETSAKXSXNVEQAFMTMAAEIKARVGPPSTGAAPAG 333
           LA  +VVD+   KQYA+   + F+ETSAK + NV   F+ +A ++     P + GA P  
Sbjct: 141 LANSRVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL-----PKNEGAGPQQ 195

Query: 332 HVKIDQGQPIDTGKSSCC 279
           +++  Q +  +   S CC
Sbjct: 196 NIRPTQNE-TNRQNSGCC 212


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 16/62 (25%), Positives = 23/62 (37%)
 Frame = -2

Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQCLEEIDRYACDNVNKLLVGNKC 515
           TAG E +  +           +I        SF NV        ++ C +   +LVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120

Query: 514 DL 509
           DL
Sbjct: 121 DL 122


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -2

Query: 694 TAGXERFRTITSAYXXGAHXIIIVXDATDQXSFSNVKQ-CLEEIDRYACDNVNKLLVGNK 518
           +AG E +  +           ++        SF NVK+  + EI  + C     LLVG +
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQ 59

Query: 517 CDL 509
            DL
Sbjct: 60  IDL 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,920
Number of Sequences: 2352
Number of extensions: 11533
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)