Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0545.Seq
(884 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 4.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 4.9
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 6.5
U15956-1|AAA67444.1| 129|Apis mellifera hymenoptaecin precursor... 22 8.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 182 NYNKKISQHYDYKXINLNNF 123
NYN +Y+Y N NN+
Sbjct: 95 NYNNNNYNNYNYNNNNYNNY 114
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 550 DNVNKLLVGNKCDLPL 503
DN+N L +K DLPL
Sbjct: 217 DNINGLSTESKADLPL 232
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 379 ISAAIVMNACSTFXEXFADVSRN 447
++ IV ACS + F +V+RN
Sbjct: 410 LAVGIVGGACSDVEQNFYEVARN 432
>U15956-1|AAA67444.1| 129|Apis mellifera hymenoptaecin precursor
protein.
Length = 129
Score = 21.8 bits (44), Expect = 8.6
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = -1
Query: 881 INPNLPKGXXASKPIXXG*RQGFXPGQDVXKRRPXNCNSDHFXGEIGYR 735
I P P A + GF GQ +R P S +F G+R
Sbjct: 80 IRPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGGRLSPYFGINGGFR 128
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 356 STGAAPAGHVKIDQGQPIDTGK 291
S P+G+++ G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,742
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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