Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0544.Seq
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   2.1  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.7  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    27   3.7  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 180 RTHTQQLARVWSPHMPQTEVKYTEPRQLHDMVQALRSYARATVQIYRL 37
           ++H    A +    + + EV  T+P+Q+  +V +  +   AT  +Y+L
Sbjct: 65  KSHADPFAHIADAILAEEEVASTQPKQITSVVASADALFFATPHLYKL 112


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 1   GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
           G++ L +  +N+  ID  GC  ++   +  I KLP L  + L
Sbjct: 320 GVQCLLKSCKNITYIDFGGCLRLSDIAVSAIAKLPYLQRVGL 361


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   LRALGEGLRNLKAIDLYGCTGITP 75
           ++ + E L+ +K IDLY C  I P
Sbjct: 104 IKTVRETLKKVKTIDLYQCAAIDP 127


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   GLRALGEGLRNLKAIDLYGCTGITPQGLD 87
           G  A+  GL+ LK ID+  C  ++   +D
Sbjct: 520 GFIAVLRGLKELKRIDIINCDSVSRDAID 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,793
Number of Sequences: 5004
Number of extensions: 40920
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)