Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0544.Seq
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 36 0.045
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 34 0.10
11_03_0004 + 8869629-8870774 34 0.14
08_01_1019 - 10290820-10291393,10293978-10294348 33 0.18
07_01_0305 - 2181727-2184793,2185635-2185945 32 0.55
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 31 0.97
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 31 0.97
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145... 31 1.3
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031... 31 1.3
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278... 30 1.7
12_02_0414 + 18824347-18825161,18826018-18828229 30 2.2
11_06_0598 - 25391923-25393197 30 2.2
11_06_0520 + 24539403-24539603,24539919-24540325,24541002-245411... 30 2.2
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46... 29 2.9
11_01_0054 + 416626-417297,417757-417885,418197-418301,418385-41... 29 2.9
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713... 29 3.9
06_03_0963 + 26368959-26369462,26370900-26371205 29 3.9
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580 29 5.2
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 5.2
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377... 29 5.2
02_01_0759 - 5628913-5630870,5631023-5631047 29 5.2
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 5.2
08_01_0970 - 9778183-9778488,9780052-9780567 28 6.8
06_03_0700 + 23650275-23650299,23650381-23652350 28 6.8
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 6.8
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 28 9.0
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 9.0
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGL 132
GL + NLK IDL C G+ L H+ K L VL LGL
Sbjct: 450 GLEQIATSCPNLKEIDLTDC-GVNDAALQHLAKCSELLVLKLGL 492
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIV 96
GL LG+G +L+++D+ C +T QGL ++
Sbjct: 295 GLELLGKGSNSLQSVDVSRCDHVTSQGLASLI 326
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 31 NLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR 144
N K +DL GC G+T LD I K+ L L+L HV+
Sbjct: 250 NGKVLDLEGCKGLTTSHLDKICKMFHLKFLSLRKAHVK 287
>11_03_0004 + 8869629-8870774
Length = 381
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVK-LPRLSVLNLG 129
GL + G NL +++LY C IT GL+++ K L LNLG
Sbjct: 120 GLEVVSIGCPNLVSLELYRCFNITDHGLENLCKGCHALKSLNLG 163
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGL 84
GL+ALG+G L+ + ++GC IT GL
Sbjct: 323 GLQALGDGCVCLQVLHIHGCGKITNNGL 350
>08_01_1019 - 10290820-10291393,10293978-10294348
Length = 314
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGL 84
GL A+ G + L+ +DLYGC +T +G+
Sbjct: 240 GLNAISGGCKELEVLDLYGCANLTLRGI 267
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 34 LKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
LK +DL GC G+ L++I KL +L LNL
Sbjct: 727 LKVLDLEGCDGLKDHHLENICKLFQLRYLNL 757
>11_06_0361 -
22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 13 LGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
+ + ++ L+ +DL + +T L+ +V LPRL L+L
Sbjct: 755 ISDNMKLLRVLDLENASDVTNDDLERVVSLPRLKFLSL 792
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 22 GLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
G+R LK +DL C+ I+ G+ HI + L L++
Sbjct: 123 GMRTLKELDLSRCSKISDAGIKHIASIESLEKLHV 157
>11_01_0185 +
1455635-1455817,1455997-1456051,1456415-1456611,
1456850-1457206,1457355-1457424,1457527-1457672,
1457786-1457831,1457910-1457962,1458507-1458651,
1459268-1459386,1459494-1459565,1459872-1459975,
1460117-1460173,1460260-1460452,1460535-1460678,
1460825-1460927,1461444-1461592,1462674-1462728,
1464037-1464227,1464580-1464701,1464831-1464978,
1465354-1465423,1465499-1465644,1466097-1466247,
1466614-1466732,1466807-1466848,1466849-1466961,
1467496-1467552,1467642-1467834,1468040-1468183,
1468567-1468665
Length = 1280
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 158 RVCGHRTCHRPRLSTLSRGNFTIWSKPCGVMPVQPYKSIAFK 33
++ H TC RL +R IW +MP + YK F+
Sbjct: 867 QLLAHGTCRTSRLELTTRRRGVIWLDQVSLMPSETYKGHGFR 908
>04_04_0423 -
25102305-25102489,25102571-25102717,25103079-25103150,
25103305-25103327,25103792-25103863,25104064-25104112,
25104344-25104415,25104880-25104951,25105281-25105352,
25106569-25106640,25106810-25106881,25106974-25107048,
25107324-25107470,25107598-25107805,25108361-25108489,
25108563-25108769
Length = 557
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 22 GLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHV 141
GL +L ++L C G+ +G +H+ L +L VLNLG ++
Sbjct: 304 GLASLVLLNLSRC-GVYDEGCEHLEGLVKLKVLNLGFNYI 342
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 19 EGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
+GLR L+ ++L C GIT + H+ L L L L
Sbjct: 230 KGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQL 265
>06_01_0389 +
2779790-2779891,2780378-2781912,2782087-2782135,
2782620-2782683,2782755-2782843
Length = 612
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR*PHT 156
L A+G G R L ++GC +T G+ + R ++ + + H R HT
Sbjct: 238 LAAIGRGCRRLAKFGIHGCDLVTSAGIRRLAFTLRPTLKEVTVLHCRLLHT 288
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 34 LKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
L+ +DL GCTGIT L I KL L L+L
Sbjct: 605 LRVLDLDGCTGITGGVLRRICKLKVLRYLSL 635
>11_06_0598 - 25391923-25393197
Length = 424
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 34 LKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
LK +DL GCTG+ + L +I K+ L L+L
Sbjct: 67 LKVLDLEGCTGLKNKHLKNICKILLLKYLSL 97
>11_06_0520 +
24539403-24539603,24539919-24540325,24541002-24541187,
24541550-24541742,24541945-24542021,24542400-24542550,
24543229-24543462,24543577-24543591
Length = 487
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVK 99
L +GEG LK I L C +T GL H+V+
Sbjct: 412 LAEIGEGCSQLKDIALSHCPEVTDVGLGHLVR 443
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGL 132
GL A+GEG + L+ ++L G + +GL ++K S+++LG+
Sbjct: 75 GLIAIGEGCKLLRNLNLRFVEGTSDEGLIGLIKNCGQSLVSLGV 118
>12_01_0054 +
463743-464414,464896-465024,465336-465440,465524-465917,
466325-466422,466505-466753,466920-466979
Length = 568
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHI-VKLPRLSVLNL 126
GL + G +L+ + L C G+T GLD + +K +L++L+L
Sbjct: 178 GLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDL 220
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVL 120
GL+++G+ +L+ + L C+G+T L +V PRL L
Sbjct: 331 GLKSIGKSCVSLRELSLSKCSGVTDTDLSFVV--PRLKNL 368
>11_01_0054 +
416626-417297,417757-417885,418197-418301,418385-418778,
419186-419283,419366-419614,419784-419843
Length = 568
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHI-VKLPRLSVLNL 126
GL + G +L+ + L C G+T GLD + +K +L++L+L
Sbjct: 178 GLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDL 220
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVL 120
GL+++G+ +L+ + L C+G+T L +V PRL L
Sbjct: 331 GLKSIGKSCVSLRELSLSKCSGVTDTDLSFVV--PRLKNL 368
>08_02_1144 +
24670224-24670607,24670723-24670928,24671211-24671310,
24671539-24672864
Length = 671
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 34 LKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
L+ +DL GC I GL I +L +L++L+L
Sbjct: 456 LEVLDLSGCRSIADSGLASISQLSKLTLLDL 486
>06_03_0963 + 26368959-26369462,26370900-26371205
Length = 269
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 244 FLYSLSIVYNLGACSLQHGRRTHTY 170
FL L IVY++G C+ ++ RR ++Y
Sbjct: 241 FLIFLIIVYSVGCCAFRNNRRDNSY 265
>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
Length = 1101
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 19 EGLRNLKAIDLYGCTGIT--PQGLDHIVKLPRLSVLN 123
+ L LK +++ GC +T PQGL HI + L++ N
Sbjct: 944 QDLARLKKLNICGCHELTCLPQGLQHISSIRSLAIDN 980
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 13 LGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWH 138
+ E +R L+ +DL G+ L+HI KL L L+L H
Sbjct: 793 VSEKMRMLRVLDLEDTEGLVDHHLEHIGKLVHLRYLSLRECH 834
>02_02_0454 +
10436491-10436820,10437487-10437570,10437667-10437797,
10437873-10437948,10438366-10438436,10438559-10438645,
10438725-10438797,10438881-10438948,10439020-10439088,
10439160-10439265,10439831-10439887,10440297-10440389
Length = 414
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 25 LRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR 144
L NL +DL G +T GL I + L+ LNL W VR
Sbjct: 272 LTNLTFLDLCGAQNVTDDGLSCISRCVCLTYLNLS-WCVR 310
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIV 96
GLRA+G ++A+++ C I QG+ +V
Sbjct: 275 GLRAIGRSCSKIQALNIKNCARIGDQGISSLV 306
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQG-LDHIVKL-PRLSVLNL 126
GL+A E R L+++ L C G+T G LD +V P+ L+L
Sbjct: 407 GLKAFTESARLLESLQLEECNGVTLVGILDFLVNCGPKFRSLSL 450
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 25 LRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
L+ L+ +DL GC ++ + LD I KL L L+L
Sbjct: 653 LKLLRVLDLEGCRWLSSRELDDICKLSLLRYLSL 686
>08_01_0970 - 9778183-9778488,9780052-9780567
Length = 273
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 244 FLYSLSIVYNLGACSLQHGRRTHTYT 167
F+ L +VY+LG C+L++ RR H Y+
Sbjct: 245 FVALLLVVYSLGCCALRNNRR-HKYS 269
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHI 93
GL A+ +G +LK + + C G+ +GL I
Sbjct: 254 GLAAIAQGCPDLKVVTVEACPGVADEGLKAI 284
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 25 LRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
L+ L+ IDL CT IT Q I+KL +L LNL
Sbjct: 671 LKFLQVIDLVDCTNIT-QLPQSILKLQKLRFLNL 703
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 34 LKAIDLYGCTGITPQGLDHIVKLPRLSVLNLG 129
L+ +DL C G+ L H+ +L L L+LG
Sbjct: 579 LRVLDLQECNGLNDDHLKHMYELWHLKYLSLG 610
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHI-VKLPRLSVLNL 126
L + G RNL+ + L C G+T G+ I +LP L +++
Sbjct: 98 LDVVAGGFRNLRVLALQNCKGVTDVGMAKIGDRLPSLQSIDV 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,602
Number of Sequences: 37544
Number of extensions: 269460
Number of successful extensions: 676
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -