Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0544.Seq
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 49 3e-06
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 36 0.046
SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017) 34 0.14
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 33 0.24
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.75
SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05) 31 0.99
SB_51275| Best HMM Match : Fic (HMM E-Value=0) 29 4.0
SB_33306| Best HMM Match : LRR_1 (HMM E-Value=0.11) 28 7.0
SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08) 28 9.2
SB_7230| Best HMM Match : DUF137 (HMM E-Value=2.4) 28 9.2
SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08) 28 9.2
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_36757| Best HMM Match : RVT_1 (HMM E-Value=4.1e-28) 28 9.2
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) 28 9.2
SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42) 28 9.2
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLW 135
+ ++ L + IDLYGCT +T GL+ ++ LP+L VLNLGLW
Sbjct: 265 IASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNLGLW 308
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIV 96
GL A+ + RNLK +DL C IT +GL +I+
Sbjct: 377 GLEAVADSCRNLKTLDLSWCWDITDKGLQYII 408
>SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)
Length = 391
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR--*PHTR*LLCMC 177
+R LG GL NL +DL IT ++ KL +L+ LNL V+ TR L
Sbjct: 173 VRLLGRGLCNLSTLDLSQNPKITGHSFKYLSKLTKLASLNLSATGVKDVIDLTRSTLLHW 232
Query: 178 ACDG 189
CDG
Sbjct: 233 TCDG 236
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVK-LPRLSVLNL 126
G++ + L NL +DL CT IT GL HI + L RL L L
Sbjct: 215 GIQQIATNLTNLLHLDLSNCTDITDLGLHHIGRHLVRLKYLYL 257
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHI-VKLPRLSV 117
G+ + E + LK +D+ CT + QGLD I LP +
Sbjct: 293 GIVTIAENCKQLKHLDITDCTLVNTQGLDTIRTTLPNCEI 332
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 31 NLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
NL ++L CT ++ Q L I KL +L LNL
Sbjct: 174 NLLELNLTYCTRVSDQDLASIAKLTQLKCLNL 205
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -3
Query: 260 IINWLIPLFIVNSIQPWRLFASTWPS-HAHIH-----NN*RVCGHRTCHRPRLSTLSR 105
+ ++ +F +S+ P S+ PS H H H N+ R H CHRPRLS R
Sbjct: 204 VFPFISSIFSSSSLSPPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHCHRPRLSNHHR 261
>SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05)
Length = 260
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 1 GLRALGE--GLRNLKAIDLYGCTGITPQGLDHIVKL 102
GLR+L GL L+ +DL GC +T QGL +V +
Sbjct: 183 GLRSLASNGGLPTLEFLDLSGCLNVTAQGLCDLVSV 218
>SB_51275| Best HMM Match : Fic (HMM E-Value=0)
Length = 341
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 147 SPHMPQTEVKYTEPRQLHDMVQALRSYARA 58
+PH P+ ++Y E + HD+VQA Y RA
Sbjct: 21 APHHPEILLQYGEFLEQHDVVQAEHLYNRA 50
>SB_33306| Best HMM Match : LRR_1 (HMM E-Value=0.11)
Length = 555
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVK-LPRLSVLNL 126
L LG RNL + LY C ++P GL + K P L ++L
Sbjct: 287 LAHLGLNCRNLCEVKLYRCDSLSPVGLCNFFKNCPSLKSIDL 328
>SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIV 96
LRA+G+ +L+ ++L CTGIT QG+ +V
Sbjct: 241 LRAIGD-CHDLEVLNLAMCTGITLQGVKALV 270
>SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08)
Length = 554
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 438 DLYGTASFISPSAINHIERLPTLSELD 464
>SB_7230| Best HMM Match : DUF137 (HMM E-Value=2.4)
Length = 353
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 237 DLYGTASFISPSAINHIERLPTLSELD 263
>SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08)
Length = 545
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 280 DLYGTASFISPSAINHIERLPTLSELD 306
>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 210 DLYGTASFISPSAINHIERLPTLSELD 236
>SB_36757| Best HMM Match : RVT_1 (HMM E-Value=4.1e-28)
Length = 381
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 43 DLYGTASFISPSAINHIERLPTLSELD 69
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 7 RALGEGLRNLKAIDLYGCTGITPQGLDHIVKL--PRLSVLNL 126
RAL G L +ID+ GC +T + H+V+L P L+ +N+
Sbjct: 206 RALHAG-SCLSSIDISGCQHLTSTSIKHLVELCGPTLTTVNV 246
>SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)
Length = 889
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 484 DLYGTASFISPSAINHIERLPTLSELD 510
>SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42)
Length = 717
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 DLYGCTG-ITPQGLDHIVKLPRLSVLN 123
DLYG I+P ++HI +LP LS L+
Sbjct: 272 DLYGTASFISPSAINHIERLPTLSELD 298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,370
Number of Sequences: 59808
Number of extensions: 326335
Number of successful extensions: 712
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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